Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45890 398 / 3e-139 SAG12 senescence-associated gene 12 (.1) AT5G50260 370 / 8e-128 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT3G48340 365 / 8e-126 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT3G19390 367 / 2e-125 Granulin repeat cysteine protease family protein (.1) AT5G43060 351 / 7e-119 Granulin repeat cysteine protease family protein (.1) AT4G35350 344 / 1e-117 XCP1 xylem cysteine peptidase 1 (.1.2) AT1G20850 343 / 2e-117 XCP2 xylem cysteine peptidase 2 (.1) AT2G27420 342 / 9e-117 Cysteine proteinases superfamily protein (.1) AT3G19400 340 / 5e-116 Cysteine proteinases superfamily protein (.1.2) AT1G47128 343 / 1e-115 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020730 [exp] 667 / 0 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10006542 [exp] 659 / 0 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10032406 [exp] 658 / 0 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10028501 [exp] 656 / 0 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10020734 [exp] 652 / 0 AT5G45890 390 / 4e-136 senescence-associated gene 12 (.1) Lus10026073 [exp] 651 / 0 AT5G45890 393 / 5e-137 senescence-associated gene 12 (.1) Lus10026362 [exp] 650 / 0 AT5G45890 396 / 2e-138 senescence-associated gene 12 (.1) Lus10003275 [exp] 649 / 0 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10009145 [exp] 649 / 0 AT5G45890 396 / 4e-138 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G088600 [exp] 549 / 0 AT5G45890 406 / 8e-142 senescence-associated gene 12 (.1) Potri.005G089100 [exp] 548 / 0 AT5G45890 405 / 1e-141 senescence-associated gene 12 (.1) Potri.007G075300 [exp] 543 / 0 AT5G45890 406 / 6e-142 senescence-associated gene 12 (.1) Potri.007G076100 [exp] 543 / 0 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075900 [exp] 543 / 0 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G076000 [exp] 540 / 0 AT5G45890 407 / 2e-142 senescence-associated gene 12 (.1) Potri.011G064900 [exp] 493 / 2e-176 AT5G45890 401 / 3e-140 senescence-associated gene 12 (.1) Potri.007G075100 [exp] 477 / 5e-171 AT5G45890 371 / 4e-129 senescence-associated gene 12 (.1) Potri.013G118200 [exp] 477 / 6e-171 AT5G45890 387 / 2e-135 senescence-associated gene 12 (.1) Potri.013G126100 [exp] 472 / 2e-168 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10020723 pacid=23140866 polypeptide=Lus10020723 locus=Lus10020723.g ID=Lus10020723.BGIv1.0 annot-version=v1.0 ATGGCGACACCAAACTGCAAATTCATTCTCTTGGCTTCCCTATTCATCATGGGAGCCCTGGCTTCTCAAGCCAGGGCAAGCATTTCACTTTCTGAAGCTG CCATGCGCATCCGGTATGAGCAATGGATGACTCGTTATGGACGAGTCTACGACAGTCCCACCGAAAAGGAGACTCGCTTTCGCATCTTCAAAGACAATGT AGCTTTCATCGACTCTTCCAATGCTGCTGGAGGCAAGTCTTACAAGCTTGGAGTCAATCAGTTTGCTGATTTGACTAACGACGAGTTCAAAGCCTCAAGA AACGGGTTCAAGGGACACATGTGCACTCCACAGCATGGACCTTTTAGGTATGCAAATGTGAGCGCGGTCCCGACGACTATGGACTGGAGGAAGAAGGGAG CAGTCACTCCTATCAAAGACCAAGGTCAATGCGGAAGCTGCTGGGCATTTTCCGCCGTTGGAGCAATGGAAGGAATCCATCAGCTCAGTACTGGAAAATT GGTGTCACTTTCGGAGCAGGAATTGGTTGATTGTGACACCAAGGGAGAGGACCAAGGATGCAACGGCGGGTTGATGGATGATGCATTCAAGTTCATCATT CAAAACAAGGGCTTGACAACCGAGACCAACTACCCTTATGACGCTGCTGATGGAACCTGTAATGCTAACAAAGAAGGCAGCAGCGCAGCCAAGATTACCG GGTATGAAGATGTGCCAGCCAACAACGAAGCCGCATTGATGAAGGCTGTAGCGAGCCAACCAATTGCAGTTGCCATTGATGCAGGGGATTCATCATTCCA GTTCTACTCCAGTGGAGTATTCACCGGGGAATGTGGAACTGAGCTAGACCATGGAGTTACTGCTGTCGGGTATGGAGAGAGCGGTGGGATGAAATACTGG TTGGTGAAGAATTCGTGGGGAGCACAGTGGGGAGAAGCCGGATACATTAGGATGCAGAAAGATGTGACCGCCAAAGAAGGTCTATGCGGAATCGCCATGC AGGCTTCCTATCCTACTGCTTGA
AA sequence Show only first row Show all	>Lus10020723 pacid=23140866 polypeptide=Lus10020723 locus=Lus10020723.g ID=Lus10020723.BGIv1.0 annot-version=v1.0 MATPNCKFILLASLFIMGALASQARASISLSEAAMRIRYEQWMTRYGRVYDSPTEKETRFRIFKDNVAFIDSSNAAGGKSYKLGVNQFADLTNDEFKASR NGFKGHMCTPQHGPFRYANVSAVPTTMDWRKKGAVTPIKDQGQCGSCWAFSAVGAMEGIHQLSTGKLVSLSEQELVDCDTKGEDQGCNGGLMDDAFKFII QNKGLTTETNYPYDAADGTCNANKEGSSAAKITGYEDVPANNEAALMKAVASQPIAVAIDAGDSSFQFYSSGVFTGECGTELDHGVTAVGYGESGGMKYW LVKNSWGAQWGEAGYIRMQKDVTAKEGLCGIAMQASYPTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020723 [exp]	0	1
AT5G10750			Protein of unknown function (D...		Lus10020102 [exp]	6.7	0.7432
AT4G35980			unknown protein		Lus10042598 [exp]	8.8	0.7544
AT1G20810			FKBP-like peptidyl-prolyl cis-...		Lus10025158 [exp]	11.0	0.7635
AT5G17510			unknown protein		Lus10024979 [exp]	14.7	0.7224
AT3G63390			unknown protein		Lus10018745 [exp]	15.1	0.6711
AT1G15940			Tudor/PWWP/MBT superfamily pro...		Lus10009948 [exp]	15.6	0.7277
AT1G36390			Co-chaperone GrpE family prote...		Lus10024760 [exp]	25.6	0.7426
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Lus10010003 [exp]	26.2	0.7333
AT3G16970			Plant self-incompatibility pro...		Lus10030565 [exp]	29.4	0.6932
AT5G10310			unknown protein		Lus10025740 [exp]	30.8	0.7272

Compare expression of checked genes

Lus10020723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.