Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23630 1906 / 0 PDR2, MIA PI DEFICIENCY RESPONSE 2, MALE GAMETOGENESIS IMPAIRED ANTHERS, phosphate deficiency response 2 (.1) AT1G27770 101 / 2e-21 PEA1, ACA1 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) AT4G37640 99 / 1e-20 ACA2 calcium ATPase 2 (.1) AT1G10130 98 / 2e-20 ATECA3, ECA3 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) AT2G22950 96 / 1e-19 ACA7 auto-regulated Ca2+-ATPase 7, Cation transporter/ E1-E2 ATPase family protein (.1) AT1G17260 91 / 3e-18 AHA10 autoinhibited H\(+\)-ATPase isoform 10, autoinhibited H(+)-ATPase isoform 10 (.1) AT4G00900 90 / 5e-18 ATECA2, ECA2 ER-type Ca2+-ATPase 2, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 2, ER-type Ca2+-ATPase 2 (.1) AT1G07810 87 / 7e-17 ATECA1, ACA3, ECA1 ER-type Ca2+-ATPase 1, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 1, ER-type Ca2+-ATPase 1 (.1) AT1G07670 82 / 1e-15 ATECA4 endomembrane-type CA-ATPase 4 (.1) AT4G29900 81 / 3e-15 CIF1, ATACA10, ACA10 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029800 [exp] 2362 / 0 AT5G23630 1940 / 0.0 PI DEFICIENCY RESPONSE 2, MALE GAMETOGENESIS IMPAIRED ANTHERS, phosphate deficiency response 2 (.1) Lus10018668 [exp] 103 / 4e-22 AT1G10130 1524 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Lus10007734 [exp] 103 / 7e-22 AT1G10130 1639 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Lus10018687 [exp] 98 / 3e-20 AT1G27770 1667 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Lus10019300 [exp] 91 / 4e-18 AT4G37640 1628 / 0.0 calcium ATPase 2 (.1) Lus10011522 [exp] 86 / 1e-16 AT4G37640 1704 / 0.0 calcium ATPase 2 (.1) Lus10042040 [exp] 84 / 6e-16 AT3G57330 1542 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Lus10016366 [exp] 82 / 2e-15 AT2G41560 1463 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10031053 [exp] 81 / 6e-15 AT2G41560 1480 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G137100 [exp] 2066 / 0 AT5G23630 1917 / 0.0 PI DEFICIENCY RESPONSE 2, MALE GAMETOGENESIS IMPAIRED ANTHERS, phosphate deficiency response 2 (.1) Potri.T012200 [exp] 2031 / 0 AT5G23630 1883 / 0.0 PI DEFICIENCY RESPONSE 2, MALE GAMETOGENESIS IMPAIRED ANTHERS, phosphate deficiency response 2 (.1) Potri.007G055500 [exp] 105 / 8e-23 AT4G37640 1721 / 0.0 calcium ATPase 2 (.1) Potri.013G040201 [exp] 104 / 3e-22 AT3G63380 1198 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.002G117400 [exp] 100 / 3e-21 AT1G10130 1648 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Potri.005G052700 [exp] 97 / 3e-20 AT3G63380 1233 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.014G101900 [exp] 94 / 4e-19 AT4G00900 1698 / 0.0 ER-type Ca2+-ATPase 2, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 2, ER-type Ca2+-ATPase 2 (.1) Potri.014G016600 [exp] 92 / 2e-18 AT1G27770 1686 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Potri.001G161400 [exp] 91 / 2e-18 AT1G17260 1441 / 0.0 autoinhibited H\(+\)-ATPase isoform 10, autoinhibited H(+)-ATPase isoform 10 (.1) Potri.018G090300 [exp] 87 / 4e-17 AT2G18960 1560 / 0.0 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10020724 pacid=23140887 polypeptide=Lus10020724 locus=Lus10020724.g ID=Lus10020724.BGIv1.0 annot-version=v1.0 ATGTTGCGGTTCCACGTTGGTGGGAAAGTGGTGGATAAAGTTGATTTGTTGAGGAAGAAGCATTGGACATGGCGACTGGATGTATGGCCGTTTGCTATTA TCTATGCTCTCTGGCTCACTACTGTCATCCCGAGCCTCGACATTGGTGATGCCTTCATTGTTTTCGGCGGCCTTGTTGCTTTCCACATTTTGGTCTTGCT CTTCACAGCCTGGTCTGTTGATTTCAGGTGCTTCGTTCAGTTCAGTAAGGCTAATGATATTCATCAAGCAGATGCATGTAAGATAACTCCAGCAAAGTTT TCAGGATCCAAAGAAGTTGTGCCCCTTTATATCCGAAAACAAGCAGGAGGGTCTTCATCTGCAGCGGATCAGGATGAGATTTTCTTTGATTTCAGAAAGC AGTGCTTTATATATTCGGATGAGAAGAAGACATTCTGCAAGCTTCCGTATCCGACGAAAGAAAAATTTGGTTACTATCTTAAATGCACCGGCCATGGCTC TGAAGCCAAAGTACTTGCTGCTAGTGAAAAATGGGGACGAAATGTATTCGAATATCCACAGCCGACGTTCCAAAAGCTGATGAAAGAGCACTGCATGGAA CCCTTTTTCGTGTTTCAGGTGTTCTGTGTTGGACTTTGGTGCTTGGATGAGTATTGGTACTACAGCATATTCACCCTGTTTATGCTGTTTATGTTTGAAT CAACAATGGCCAAAAGCAGGCTTAAGACTCTAAGTGAGCTTAGGCGTGTAAGAGTGGACAATCAAACACTTATGGTGCACCGCTGTGGAAAGTGGGTAAA GCTTTCCGGAACTGAACTGCTTCCCGGGGATATTGTATCGGTTGGTCGCTCTGTTGGACAGAATGGAGAAGACAAGACAGTGCCTGCAGACATGCTTCTC TTAGCTGGGAGCGCCATTGTGAATGAAGCCATTCTCACAGGCGAGTCAACTCCCCAGTGGAAGGTTTCAATTGCTGCTAGGGTAAAAGATGAGAATCTAT CTGCTAGAAGGGATAAAACCCATGTCTTATTTGGTGGAACTAAGATATTGCAGCACACTCCAGATAAGACTTTCGCCCTGCGAACCCCTGATGGTGGCTG CCTGGCTGTTGTTCTAAGAACTGGGTTCGAAACGAGTCAAGGAAAGTTGATGAGGACTATTTTGTTCTCTACAGAAAGGGTAACTGCTAACAGCTGGGAA AGTGGTCTTTTCATTCTGTTCTTGGTAGTGTTTGCTGTCATCGCAGCAGGTTATGTTCTGAAGAAGGGATTGGAGGACCCCACGAGGAGCAAGTACAAGC TTTTCCTCAGTTGTTCATTCATCATAACATCCGTGATCCCACCTGAGTTGCCAATGGAACTATCAATAGCAGTTAATACATCTCTAATTGCCTTGGCCCG TCGTGGAATATTTTGCACGGAGCCTTTCCGCATTCCATTTGCTGGGAAGGTTGATATTTGTTGTTTTGATAAGACTGGAACACTCACTTCAGATGACATG GAGTTCCGCGGGGTTGTTGGTTTGGATGATAGTACTGATTTGGAATCTGACATGACTAAAGTGCCTTCCCGTACAGTGGAAATTTTGGCAGCTTGTCATG CATTGGTTTTTGTGGACAATAAGCTGGTTGGGGATCCTCTTGAGAAGGCTGCACTTAAAGGAATAGACTGGAGCTATAAATCTGACGAGAAGGCTGTGCC CAAGAGGGGATGTGGGAATGCTGTTCAGATTGTTCAACGGCACCATTTTGCATCTTATTTAAAGAGAATGTCAGTTGTTGTTCGTGTAGAAGAGGCATTT TTGGCTTTTGTAAAGGGTGCACCGGAGACTATTCAAGATAGGCTTACTAACTTGCCACCATCCTATGTGGATACATACAAGAAATACACACGTCAAGGAT CCCGCGTTTTGGCCCTCGCTTTCAAGTCCCTTCCGGACATGACAGTCAGTGAAGCACGAAACATGGATAGGGATGAAGTGGAGAACGGTCTTACTTTTGC TGGTTTTGCTGTGTTTAACTGCCCGATCAGAGCAGATTCAGCTACTATATTGTTAGAGTTAAAGAATTCATCGCACGACTTGGCAATGATTACCGGCGAC CAAGCGTTGACAGCTTGCCATGTTGCTAACCAAGTGCATATAATCTCGAAGCCAACATTGATACTTGTCAAATCGAGAAACGAAGGATACGAGTGGATTT CACCAGATGAAACAGAAACTGTCCCGTACAGTGACAAAGAGGTTGAGGCTTTATCAGAAACTCATGACCTTTGCATTGGAGGTGACTGTATGGAAATGCT GCAACAGAGTTCAGCTGTTCTTCGAGTCATTCCTTTTGTCAAGGTCTTTGCAAGGGTGGCCCCTGAACAAAAAGAATTGATCATGACTACATTCAAGACA GTAGGGAGAGTTACATTGATGTGCGGTGATGGAACAAATGACGTTGGAGCTCTGAAGCAGGCCCATGTCGGTGTTGCACTGTTGAATGCAGTACCTCCAT CTTCAGAAACAGCTAAAGATAAAGATGGGAAAGATGGGAAAGATGGGAAAGAAGGAAATCAAAAGACTGTCAAACCCAAGAAAGCAAATGCTACTGAGAC AGGATCTTCAAAGAGCAAAGCTATGACTAAGGCAGAGTCAAGCAGTAGGTCGTCAGCTGGTAACCGTCATCTAACAGCTGTAGAAATGCAGCAGCAGAAA CTGAAGAAACTGATGGATGAGATGAACGAAGAGGGCGATGGCCGCTCTGCTCCCGTAGTCAAACTAGGTGATGCTTCAATGGCGTCACCTTTTACAGCCA AGCATGCGTCAGTTGCCCCAACTACCGACATTATTCGTCAAGGTCGCAGCACTCTGGTGACTACCCTTCAGATGTTTAAAATCCTGGGTCTGAACTGCCT TGCCACTGCCTACGTGCTTAGTGTCATGTACTTGGATGGCGTGAAGCTCGGCGACGTACAGGCAACAATCAGCGGCATATTTACGGCCGCATTTTTCCTC TTCATTTCTCACGCAAGGCCGCTCCCTACTTTATCGTCAGAGCGACCGCACCCTAACATCTTCTGCTTCTACGTCTTCCTTTCTCTGATGGGGCAGTTTG CAATGCACTTGGTCTTCCTCATTTCTTCAGTGAAAGAAGCGGAGAAGCACATGCCGGAGGAGTGCATCGAGCCGGACTCCGATTTCCACCCGAATCTGGT CAACACGGTTTCGTACATGGTGAGCATGATGCTCCAGGTTGCCACTTTTGCAGTGAACTACATGGGACATCCTTTCAACCAGAGTATCTCAGAGAACAAA CCTTTCTTGTATGCAATTCTGGGTGCTGGTGGGTTTTTTACCATCATAACCTCGGATCTGTTCAGGGATCTGAACGACTGGTTAAAGTTGGTGCCTTTGC CGCCGGGTTTGAGGAACAAGCTTCTGATCTGGGCTTTGCTTACCTACTTCGCCTGCTATTCGTGGGATAGATTGTTGAGGTGGGCATTCCCTGGCAAGGT TCCAGCCTGGCAGAAAAAGCAACGTGCTGCTGCGGCAAATTTGGAGAAGAAAAAACGTGTATGA
AA sequence Show only first row Show all	>Lus10020724 pacid=23140887 polypeptide=Lus10020724 locus=Lus10020724.g ID=Lus10020724.BGIv1.0 annot-version=v1.0 MLRFHVGGKVVDKVDLLRKKHWTWRLDVWPFAIIYALWLTTVIPSLDIGDAFIVFGGLVAFHILVLLFTAWSVDFRCFVQFSKANDIHQADACKITPAKF SGSKEVVPLYIRKQAGGSSSAADQDEIFFDFRKQCFIYSDEKKTFCKLPYPTKEKFGYYLKCTGHGSEAKVLAASEKWGRNVFEYPQPTFQKLMKEHCME PFFVFQVFCVGLWCLDEYWYYSIFTLFMLFMFESTMAKSRLKTLSELRRVRVDNQTLMVHRCGKWVKLSGTELLPGDIVSVGRSVGQNGEDKTVPADMLL LAGSAIVNEAILTGESTPQWKVSIAARVKDENLSARRDKTHVLFGGTKILQHTPDKTFALRTPDGGCLAVVLRTGFETSQGKLMRTILFSTERVTANSWE SGLFILFLVVFAVIAAGYVLKKGLEDPTRSKYKLFLSCSFIITSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTLTSDDM EFRGVVGLDDSTDLESDMTKVPSRTVEILAACHALVFVDNKLVGDPLEKAALKGIDWSYKSDEKAVPKRGCGNAVQIVQRHHFASYLKRMSVVVRVEEAF LAFVKGAPETIQDRLTNLPPSYVDTYKKYTRQGSRVLALAFKSLPDMTVSEARNMDRDEVENGLTFAGFAVFNCPIRADSATILLELKNSSHDLAMITGD QALTACHVANQVHIISKPTLILVKSRNEGYEWISPDETETVPYSDKEVEALSETHDLCIGGDCMEMLQQSSAVLRVIPFVKVFARVAPEQKELIMTTFKT VGRVTLMCGDGTNDVGALKQAHVGVALLNAVPPSSETAKDKDGKDGKDGKEGNQKTVKPKKANATETGSSKSKAMTKAESSSRSSAGNRHLTAVEMQQQK LKKLMDEMNEEGDGRSAPVVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDVQATISGIFTAAFFL FISHARPLPTLSSERPHPNIFCFYVFLSLMGQFAMHLVFLISSVKEAEKHMPEECIEPDSDFHPNLVNTVSYMVSMMLQVATFAVNYMGHPFNQSISENK PFLYAILGAGGFFTIITSDLFRDLNDWLKLVPLPPGLRNKLLIWALLTYFACYSWDRLLRWAFPGKVPAWQKKQRAAAANLEKKKRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23630		PDR2, MIA	PI DEFICIENCY RESPONSE 2, MALE...		Lus10020724 [exp]	0	1
AT5G23630		PDR2, MIA	PI DEFICIENCY RESPONSE 2, MALE...		Lus10029800 [exp]	1.0	0.9762
AT1G11160			Transducin/WD40 repeat-like su...		Lus10018458 [exp]	2.0	0.9502
AT1G27430			GYF domain-containing protein ...		Lus10003139 [exp]	4.0	0.9577
AT3G08960			ARM repeat superfamily protein...		Lus10004753 [exp]	7.7	0.9428
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Lus10001216 [exp]	8.1	0.9539
AT3G50370			unknown protein		Lus10009355 [exp]	9.9	0.9445
AT1G71220		UGGT, PSL2, EBS...	PRIORITY IN SWEET LIFE 2, EMS-...		Lus10019946 [exp]	10.4	0.9309
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Lus10028403 [exp]	11.0	0.9400
AT1G27430			GYF domain-containing protein ...		Lus10011331 [exp]	13.4	0.9372
AT5G20930		TSL	TOUSLED, Protein kinase superf...		Lus10036171 [exp]	14.1	0.9320

Compare expression of checked genes

Lus10020724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.