Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43040 853 / 0 NPG1 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) AT4G28600 452 / 2e-149 NPGR2 no pollen germination related 2 (.1) AT1G27460 392 / 6e-127 NPGR1 no pollen germination related 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029803 [exp] 1212 / 0 AT2G43040 934 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10017638 [exp] 996 / 0 AT2G43040 929 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10033595 [exp] 986 / 0 AT2G43040 926 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10011793 [exp] 493 / 1e-165 AT4G28600 751 / 0.0 no pollen germination related 2 (.1) Lus10023748 [exp] 486 / 8e-163 AT4G28600 753 / 0.0 no pollen germination related 2 (.1) Lus10022897 [exp] 436 / 2e-143 AT4G28600 736 / 0.0 no pollen germination related 2 (.1) Lus10008236 [exp] 435 / 9e-143 AT4G28600 738 / 0.0 no pollen germination related 2 (.1) Lus10024926 [exp] 428 / 2e-140 AT4G28600 726 / 0.0 no pollen germination related 2 (.1) Lus10003618 [exp] 424 / 2e-138 AT4G28600 728 / 0.0 no pollen germination related 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G055200 [exp] 884 / 0 AT2G43040 1035 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.002G259300 [exp] 475 / 2e-158 AT4G28600 751 / 0.0 no pollen germination related 2 (.1) Potri.008G169500 [exp] 469 / 6e-156 AT4G28600 699 / 0.0 no pollen germination related 2 (.1) Potri.010G068700 [exp] 456 / 3e-151 AT4G28600 708 / 0.0 no pollen germination related 2 (.1) Potri.014G016000 [exp] 399 / 3e-129 AT1G27460 841 / 0.0 no pollen germination related 1 (.1) Potri.002G118500 [exp] 394 / 1e-127 AT1G27460 868 / 0.0 no pollen germination related 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020725 pacid=23140800 polypeptide=Lus10020725 locus=Lus10020725.g ID=Lus10020725.BGIv1.0 annot-version=v1.0 ATGATAGGGAGCAGCCAATCTGCAGAGTCCAGTGGGAGTGAGGACCAAATAAAGGTCCGCGAATTTTGTGCAAATGGAGCTTGCGTGAAAGCAGACGAGA TCGAAGCAAAGCTCGATGAAGGAAACATACAAGCGGCCGAATCTTCTCTACGGGAGGGGTTATCTCTCAGTCTCGAGGAAGCTAGATCACTCCTAGGGAG ATTGGAGTATCAGAGAGGGAATGTAGAAGGTGCCCTACGTGTTTTCGATGGCATTGATCTCCAAGCTGCATCGGAGAGATTGCAGTCGTCCATAGCAGGC AAGAATGCTCACAAAAACCAATCCCCTGGGGGTGGCTCACAGCATTCGGCCAGTTTGGTGCTCGAAGCAATATACTTGAAAGCCAAGTCTCTACAAAAGC TTGGGCGATCTTACGATGCTGCAAAAGAGTGTAAAAGTGTGCTTGATGCAGTGGAGAAGATATTCCAGCAGGGAATATCTGACGTACAAGTAGACACTAG ATTACAAGAAACGGTTAGTCAAGCAGTAGAGCTACTTCCAGAGCTTTGGAAGCAGGCCGGTTATTACCCCGAAGCGATATCCGCTTACAGAAGAGCTCTC CTAAGTCAGTGGAGTCTCGAAAACGACTGCTGTGCGAGGATCCAGAAAGCATTTGCGGTGTTTTTGTTACACAGCGGAGTGGAGGCCGCCCCTCCGAGCT TAGCATCTCAGGTCGAAGGCTCCTACGTACCGAAACATAATCTCGAAGAAGCTGTTTTGCTTTTGCTGATTCTTGTTAGGAAGTGTTGCCTTGGTAAGAC AAAATGGGACCCGTCGGTTATGGAACATCTGTACTTTGCATTATCCATGTGTAGCCAAACTGGCGTTCTCGGGAAGGAGCTTGAAGAGACAATGCCGGGT GTTCTCCACCGCACTGATCGTTGGAATACTTTAGCTTTTTGTTACAGTGGAGCAGGACAACACAAAGCTGCTCTAAACTTGCTACGCAAGTCTCTCCATA GACACGAAAGACCGGATGATCTAAAGGCACTCTTGCTGGCTGCGAAAATTTGCACCGAGGATTCGTATCTTGCTGCGGAGGGAGTTGAGTATGCAAAGAG AGCGCTTACAAAAGCACAGGAAAGTGATGAGCATCTGAAAAGTGTGGCTGTCCATATGTTAGGTCTTTGTTTGGCGAAACAGGCGAAACTTTGTTCCTCC GATTTCGAGAGGACACGGTTGCAGTCCGAAGCGCTCAAATCTCTGGAAGCTGCGCTTGCTTTGGATCCAAGCAATCTGGATATAGTCTTTGGCTTGAGTG TTCAATATGCCGAGCAACGGAATTTGAGCGTTGCTCTACGTTACGCCAAGCAATATATCGATGCAACTGGCGGCTCGATGTTGAAAGGTTGGAGGTTGCT TGTCTTGATCTTATCTGCTCAGCAGAGATTCTCGGAGGCTTCGGTGATTACTGATGCTGCTTTGGACGAGACTGCGAAATGGGAACAAGGACCGTTGCTC AGATTGAAAGCGAAACTCAAGGTCGTGCAGTCCTTACCTGCGGAAGCTATCGAAACTTACCGGTATCTGCTTGCGTTGATCCAAGCTCAGAAGAAAGCTT TCGGCGCCATCATAAGCGTGTCGCAGTCTGAGGATGATAAGGTGAATGAATATGAAGTTTGGCATGGTCTAGCTGATTTGTATTCCAGTCTCTCTCAGTG GAAGGATGCAGAAGTGTGCCTAGACAAAGCAAGAGAACTGAAAAAAGCTCTTCATTCACATTGTTTCCTTCATCCAGGTGCGATGCACGCAGCCCGCGGA GAGTTCCAAGATGCTTTTTGTTCTTACATTTGTGGTCATATGATGGAGCCGAATCATGTCCCTGGCATCATACTGGTTGCCTCCTTAATATCCAAGAACA GGTCAGAGGCAGCATTACCTGTAGCAAGAAGCATACTCTCCGACGCGTTGAAGCTAGAACCGGCCAATCGTAAGGCTTGGTATCATTTAGGGACTGTTCA TAGGGACGACGGACGCACGGCTGATGCTGCTGACTGCTTCCAAGCTGCCTCCATGCTCGAGGAATCCGACCCAATCGAGAGTTTCAGTTCTGTCTACTGA
AA sequence Show only first row Show all	>Lus10020725 pacid=23140800 polypeptide=Lus10020725 locus=Lus10020725.g ID=Lus10020725.BGIv1.0 annot-version=v1.0 MIGSSQSAESSGSEDQIKVREFCANGACVKADEIEAKLDEGNIQAAESSLREGLSLSLEEARSLLGRLEYQRGNVEGALRVFDGIDLQAASERLQSSIAG KNAHKNQSPGGGSQHSASLVLEAIYLKAKSLQKLGRSYDAAKECKSVLDAVEKIFQQGISDVQVDTRLQETVSQAVELLPELWKQAGYYPEAISAYRRAL LSQWSLENDCCARIQKAFAVFLLHSGVEAAPPSLASQVEGSYVPKHNLEEAVLLLLILVRKCCLGKTKWDPSVMEHLYFALSMCSQTGVLGKELEETMPG VLHRTDRWNTLAFCYSGAGQHKAALNLLRKSLHRHERPDDLKALLLAAKICTEDSYLAAEGVEYAKRALTKAQESDEHLKSVAVHMLGLCLAKQAKLCSS DFERTRLQSEALKSLEAALALDPSNLDIVFGLSVQYAEQRNLSVALRYAKQYIDATGGSMLKGWRLLVLILSAQQRFSEASVITDAALDETAKWEQGPLL RLKAKLKVVQSLPAEAIETYRYLLALIQAQKKAFGAIISVSQSEDDKVNEYEVWHGLADLYSSLSQWKDAEVCLDKARELKKALHSHCFLHPGAMHAARG EFQDAFCSYICGHMMEPNHVPGIILVASLISKNRSEAALPVARSILSDALKLEPANRKAWYHLGTVHRDDGRTADAADCFQAASMLEESDPIESFSSVY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10020725 [exp]	0	1
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10020720 [exp]	2.2	0.9546
AT5G60700			glycosyltransferase family pro...		Lus10037396 [exp]	2.4	0.9440
AT2G16250			Leucine-rich repeat protein ki...		Lus10040455 [exp]	3.5	0.9340
AT5G04590		SIR	sulfite reductase (.1)		Lus10030131 [exp]	4.2	0.9343
AT5G58700		ATPLC4	phosphatidylinositol-speciwc p...		Lus10018241 [exp]	4.5	0.9192
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10022737 [exp]	9.5	0.9124
AT3G54130			Josephin family protein (.1)		Lus10035536 [exp]	10.6	0.9228
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10035255 [exp]	10.7	0.9285
AT1G43710		EMB1075	embryo defective 1075, Pyridox...		Lus10028592 [exp]	11.7	0.9284
AT3G21690			MATE efflux family protein (.1...		Lus10027169 [exp]	12.2	0.9004

Compare expression of checked genes

Lus10020725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.