Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43020 786 / 0 ATPAO2 polyamine oxidase 2 (.1) AT3G59050 741 / 0 ATPAO3 polyamine oxidase 3 (.1) AT1G65840 595 / 0 ATPAO4 polyamine oxidase 4 (.1) AT4G16310 210 / 8e-59 LDL3 LSD1-like 3 (.1) AT3G13682 181 / 1e-49 LDL2 LSD1-like2 (.1) AT1G62830 180 / 7e-49 ATLSD1, ATSWP1, LDL1, SWP1 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) AT3G10390 178 / 3e-48 FLD FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) AT5G13700 137 / 2e-35 ATPAO1, APAO polyamine oxidase 1 (.1) AT4G29720 112 / 2e-26 ATPAO5 polyamine oxidase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029804 [exp] 957 / 0 AT2G43020 790 / 0.0 polyamine oxidase 2 (.1) Lus10005021 [exp] 736 / 0 AT2G43020 720 / 0.0 polyamine oxidase 2 (.1) Lus10001044 [exp] 466 / 1e-164 AT2G43020 439 / 2e-154 polyamine oxidase 2 (.1) Lus10033928 [exp] 216 / 6e-61 AT4G16310 1391 / 0.0 LSD1-like 3 (.1) Lus10024311 [exp] 214 / 3e-60 AT4G16310 1471 / 0.0 LSD1-like 3 (.1) Lus10015996 [exp] 181 / 4e-49 AT1G62830 988 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10012283 [exp] 177 / 5e-48 AT1G62830 984 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10017464 [exp] 167 / 2e-44 AT3G10390 1198 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Lus10037885 [exp] 164 / 1e-43 AT3G13682 969 / 0.0 LSD1-like2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G055300 [exp] 814 / 0 AT2G43020 809 / 0.0 polyamine oxidase 2 (.1) Potri.005G207300 [exp] 798 / 0 AT2G43020 820 / 0.0 polyamine oxidase 2 (.1) Potri.004G075800 [exp] 606 / 0 AT1G65840 728 / 0.0 polyamine oxidase 4 (.1) Potri.017G144001 [exp] 600 / 0 AT1G65840 721 / 0.0 polyamine oxidase 4 (.1) Potri.002G027100 [exp] 207 / 1e-57 AT4G16310 1504 / 0.0 LSD1-like 3 (.1) Potri.005G235400 [exp] 206 / 2e-57 AT4G16310 1192 / 0.0 LSD1-like 3 (.1) Potri.002G013100 [exp] 177 / 4e-48 AT1G62830 964 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Potri.008G035200 [exp] 175 / 4e-47 AT3G10390 1152 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.010G227200 [exp] 171 / 7e-46 AT3G10390 1135 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.011G127600 [exp] 170 / 1e-45 AT3G13682 959 / 0.0 LSD1-like2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01593 [flax] [poplar] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10020726 pacid=23140912 polypeptide=Lus10020726 locus=Lus10020726.g ID=Lus10020726.BGIv1.0 annot-version=v1.0 ATGGCGTCTGGATTCAGGAGTAATCGCAATCAATTGAACACAGCTAATTGTCAGTCTAATGGCGGGAAGCGACAAGGACATTCCCCGTCAGCTATCGTGA TCGGCGGTGGTGTTGCTGGGCTTGCTGCTGGTCGTGCTCTCCATGATGCAGGCTTTCGGGTTGTTTTGCTTGAATCACGGGATAGGATCGGTGGGCGAGT TCATACCGACTTCACATTTGGTTTCCCCATTGACCTGGGTGCATCATGGTTGCATGGGGTCTGCGATCAGAATCCCTTGGCACCGCTGATTGGGAGACTG GGTTTGCCGTTGTACCGAACTAGTGGTGAAAATTCTGTGTTGTATGACCATGACTTGGAGAGTTACGCACTCTTTGACATGGAGGGTAATCAAGTTCCTC AGGAGTTGGTCACCAGGGTCGGTGAAATTTTTGATGAAATCTTAAAGGAGGCGGATAAAGTAAGAGAAGAGCATAAGGAGGACATGAACATAAAAGAAGC CTTTTCTATTGTATCAGAAAGAAGGCCAGATTTAAGGTTGGATGGTGTTGCCTATAAGGTCCTTCAGTGGTACCTTTGCAGGATGGAAGGTTGGTTTGCC GCAGATGCTGAAACCATCTCACTTCAGTGCTGGGATCAAGAAGAATTGCTCCCAGGTGGCCACGGACTCATGGTTAGGGGTTACATTCCAGTAATTAACA CTCTTGCCAAGGGACTTGATATTCGTCTGGGGCATAGGGTAAAAAATATTGTTAGAAGTCATAATGGCGTGAAAGTGACGACAGAAAATGGGAGGACGTT TGTAGCTGATGCAACAGTCATTGCCGTGCCTCTTGGAGTGCTGAAATCTAAGACGATTACCTTTGAACCAAAGTTACCAGATTGGAAGGAGAACGCCATT GACGACCTCGGAGTCGGGATCGAGAACAAGATCGTGTTACACTTCGACAATGTGTTCTGGCCGAATGTAGAGTTCCTAGGAGTTGTCGCAGACACCTCGT ATAGCTGCAGCTACTTCCTAAATCTCCACAAGGCTACTGGCCACCCTGTTCTAGTGTACATGCCAGCTGGGCAGCTTGCAAGAGACATCGAGAAGATGTC CGATGAAGAAGCGGCTAATTTCGCCGTCTTGCAACTCAAGAGGATCCTTCCCGATGCATCCCCTCCGATTCAACATCTTGTGTCTCGTTGGGGATCAGAC ATAAACTCCCTCGGGTCCTACAGCTATGATATCGTGGGAAAACCCCACGATCTGTACGAAAGGCTAAGAGTCCCGGTCGATAACCTATTCTTTGCCGGAG AGGCAACAAGCGTGAGCTTCCCTGGTTCAGTACACGGTGCATTCTCCACAGGAATGATGGCTGCTGAAGATTGCAGGATGCGGGTACTAGAGCGGTATGG TGAGATGGACTTGTTTATCCAGCCGGAAATAGCCGAGGAGATATCCATCCCGCTCCTCATCTCGCGTCTGTGA
AA sequence Show only first row Show all	>Lus10020726 pacid=23140912 polypeptide=Lus10020726 locus=Lus10020726.g ID=Lus10020726.BGIv1.0 annot-version=v1.0 MASGFRSNRNQLNTANCQSNGGKRQGHSPSAIVIGGGVAGLAAGRALHDAGFRVVLLESRDRIGGRVHTDFTFGFPIDLGASWLHGVCDQNPLAPLIGRL GLPLYRTSGENSVLYDHDLESYALFDMEGNQVPQELVTRVGEIFDEILKEADKVREEHKEDMNIKEAFSIVSERRPDLRLDGVAYKVLQWYLCRMEGWFA ADAETISLQCWDQEELLPGGHGLMVRGYIPVINTLAKGLDIRLGHRVKNIVRSHNGVKVTTENGRTFVADATVIAVPLGVLKSKTITFEPKLPDWKENAI DDLGVGIENKIVLHFDNVFWPNVEFLGVVADTSYSCSYFLNLHKATGHPVLVYMPAGQLARDIEKMSDEEAANFAVLQLKRILPDASPPIQHLVSRWGSD INSLGSYSYDIVGKPHDLYERLRVPVDNLFFAGEATSVSFPGSVHGAFSTGMMAAEDCRMRVLERYGEMDLFIQPEIAEEISIPLLISRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10020726 [exp]	0	1
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10029804 [exp]	1.0	0.9308
AT3G19340			Protein of unknown function (D...		Lus10031975 [exp]	2.0	0.8938
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Lus10023930 [exp]	2.6	0.8834
AT2G36810			ARM repeat superfamily protein...		Lus10023895 [exp]	7.3	0.8507
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10003488 [exp]	7.5	0.8664
AT2G38330			MATE efflux family protein (.1...		Lus10012227 [exp]	10.6	0.8888
AT2G36810			ARM repeat superfamily protein...		Lus10014405 [exp]	11.4	0.8230
AT5G06370			NC domain-containing protein-r...		Lus10004198 [exp]	12.0	0.8761
AT5G20140			SOUL heme-binding family prote...		Lus10013345 [exp]	13.5	0.8891
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10002139 [exp]	14.8	0.8543

Compare expression of checked genes

Lus10020726 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.