Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30800 1174 / 0 ATVT-1, HVT1 helicase in vascular tissue and tapetum (.1) AT1G06670 1115 / 0 NIH nuclear DEIH-boxhelicase (.1) AT2G35920 333 / 2e-95 RNA helicase family protein (.1) AT2G01130 302 / 2e-84 DEA(D/H)-box RNA helicase family protein (.1) AT1G48650 290 / 3e-80 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT5G04895 282 / 1e-77 DEA(D/H)-box RNA helicase family protein (.1) AT1G58060 277 / 2e-75 RNA helicase family protein (.1) AT1G58050 261 / 2e-70 RNA helicase family protein (.1) AT3G26560 180 / 2e-45 ATP-dependent RNA helicase, putative (.1) AT5G13010 180 / 3e-45 EMB3011 embryo defective 3011, RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029806 [exp] 2079 / 0 AT2G30800 1250 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10001415 [exp] 1381 / 0 AT2G30800 1276 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10029805 [exp] 615 / 0 AT3G59060 163 / 7e-45 PHYTOCHROME-INTERACTING FACTOR 5, phytochrome interacting factor 3-like 6 (.1.2.3.4) Lus10009012 [exp] 319 / 3e-89 AT1G48650 1644 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10001049 [exp] 291 / 4e-89 AT2G30800 244 / 1e-73 helicase in vascular tissue and tapetum (.1) Lus10009022 [exp] 313 / 1e-88 AT2G35920 1447 / 0.0 RNA helicase family protein (.1) Lus10009643 [exp] 313 / 4e-88 AT1G48650 1469 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10013479 [exp] 310 / 2e-86 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10007938 [exp] 306 / 2e-85 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G206500 [exp] 1308 / 0 AT2G30800 1374 / 0.0 helicase in vascular tissue and tapetum (.1) Potri.016G068900 [exp] 328 / 1e-93 AT2G35920 1474 / 0.0 RNA helicase family protein (.1) Potri.010G117800 [exp] 327 / 5e-92 AT2G01130 1639 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.010G246000 [exp] 315 / 2e-88 AT5G04895 1862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G042500 [exp] 314 / 8e-88 AT1G48650 1629 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Potri.008G014100 [exp] 290 / 3e-80 AT5G04895 1835 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.004G222900 [exp] 250 / 6e-67 AT1G58060 1757 / 0.0 RNA helicase family protein (.1) Potri.002G055400 [exp] 181 / 4e-48 AT2G43010 177 / 6e-50 phytochrome interacting factor 4 (.1.2) Potri.010G057200 [exp] 172 / 6e-44 AT1G27900 1077 / 0.0 RNA helicase family protein (.1) Potri.010G172500 [exp] 173 / 4e-43 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain CL0021 [flax] [poplar] OB PF07717 [flax] [poplar] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase CL0023 [flax] [poplar] PF04408 [flax] [poplar] HA2 Helicase associated domain (HA2)
Representative CDS sequence Show only first row Show all	>Lus10020727 pacid=23140828 polypeptide=Lus10020727 locus=Lus10020727.g ID=Lus10020727.BGIv1.0 annot-version=v1.0 ATGGCGAGGATGAAGGGGCAGAAGGGGCAGAAAGGCAAGAGTCTGTGGGGTAAAGTAAACCACGTTCCTAAGGAAAATCGTGCTCATATTCATGAACTAC TCCGAACGTTTCAAGCTTCAAACGAGCCAGGGATACTTATTAGCATAGTTTCTTACAAACTTGAACTTAATTGTAGGACTGGAAACCAACGATGTGTTTC TGTTTTTAAGACACCTGGGAAGGAACCTAAAAACAAGAGTACTGGGAAGCAACAGAAAAAGGAAAAAAACAACGAGAATTTAAGCTGTTTGACTCTTTCA GAGCAGTCACAGATGATCTTACAGGATTTGTTTTCACGTTACCCTCCTGAAGATGAAGACCTTGGTTCCAGGTTGGCTCAGAAGAATAGGAGTAAAGCTG GCCAAAAAAGGGGTGATTCTATGTTCTCTTCGCCTTTGATAAGCAAAGAGGATATAAGGAAGAAGGTGGAGTTGCTTAGTTCGAAATTGAAAAAGGATGC ACGTTTCAGAAAGACTTTTGAAGCAAGGTCTAAGCTTCCTATTGCAGCGTTCTCTGAAGTCATTAGATCCACTGTTGATTCTAATCAGGTTGTCCTCATA TCTGGCGAGACTGGTTGCGGGAAAACCACACAGGTCCCACAAATGTTGTTGGATCATCTGTGGAGCAAAGGTGAGGTAGGCAAAATAGTTTGCACTCAAC CTCGGCGTATCTCTGCAATGTCAGTTGCTGATAGAATTTCTCAAGAAAGGGGACAAACAACTGGAGATGATGTTGGATATAAGGCAAGCATCAAATATCA TATTCGGTTAGAAAGTAAGGGTAGCAGGAACTCTTCAATTGTGTTTTGCACAAATGGGATTTTACTTAGGGTGCTTGTTTCTGGTGGTACAAGCCTATCC GGTCCTTCCAGCAAACGAGGTGAAGAACTGAGTGGGATATCTCACATTATAGTGGATGAAATCCATGAGAGGGATCGTCATTCAGATTTCATGTTGACAG TAATCAGGGACTTGCTTCCTCTGTATCCGCATCTTCGACTGATACTGATGAGTGCTACCCTTGATGCGGAGAGATTTGCTCAGTATTTTGGTGGCTGCCC AATTATACGTGTCCCTGGTTTCACTTTTCCTGTTACAGCCTTATATTTAGAGGATGCTCTTTCTATCCTAAAATCTTCAAATGGCAATCATCCCGATTCT TCCATGCAAGATTCCCCAAATGACCTGAGCAAGGAAGAGAAAGCTGCTTTAGACGAAGCTATTCATTTGGCATGGTTTAATGATGAGTTTGATCTTCTCA TGGACTTGGTATCCTCTGGAGGGAGCCCAAATGTTTATAATTACCAGCATTCTTCAACAGGGTTAACCCCATTGATGGTCTTTGCTGGAAAGGGTAGAGT GGGGGATGTTTGCATGCTCCTCTCTGTAGGTGCTAACCACGGTTTAAAGAACAAAGATGGTATGACAGCGTTGGCATTGGCAGAAAGAGAAAACCAACAA GAAGTTGCTGGAGTACTAAAAGGTCATATCTGCAGCGCCCTGTGTGACCCTTCAGAACACCAAGCTTTGCTTGATAAATATCTAGCAGAAGTCGATCCTG ATCTTATCGATGTCATGCTTATAGAGCGTTTATTGAAGAAGATATGTCAGGACTCTAGAGATGGTGCTATAATCGTCTTCCTACCAGGATGGGATGATAT AAACAAGATCCGGAAGAGATTACTGGAAAACTCCTTCTTTAAGGATCCTTCCAAGTTTCTGATAATTTCTCTTCATTCGATGGTTCCACCAGCCGAGCAA AAGAAGGTTTTCGATCGTCCTCGTCTAGGTTGCCGTAAGATAGTCCTTTCAACTAATATAGCAGAAAGTTCCATCACTATTGATGATGTTGTCTACGTCA TAGACAGTGGTCGAATGAAAGAGAAAAGCTACGATCCCTTCAGTAATGTCTCTACTCTTCAAACTTCATGGATATCAAAGGCAAGTGCAAAACAAAGGGA GGGGCGTGCAGGTCGATGTCAGCCTGGGATATGTTACCATCTTTTTTCGAAATTTCGAGCTGCTTCCTTACCTGATTTCCAAGTCCCGGAAATTAGGAGA ATACCAATTGATGAACTTTGTCTGCAGGTGAAGTTGCTGGATCCGAGTTGCAAGATAGAATCTTTTTTGCTGAAGACGATGGATCCTCCCTACCCTGAAT CCATAGCTAATGCTATCGGGGCTCTTGAAGAGCTTGGTGCTTTATCACCCGGTGAACAGTTGACAGAACTAGGAAAAACACTCGGTCGCTTACCTGTTCA CCCTTTAATCAGCAAGATGCTATTATTTGGCGTCTTGATGAACTGTCTTGACCCTGCATTGACCATAGCGTGTGCCGCTGACTACAGATCTCCATTTATG CTTCCCATATCCCCGGACGAGAAAAAGAAAGCAAATGACCGTAAATTTGAACTTGGTTCGGTATATGGCGGCTTCAGTGATCAGCTTGCGGTAGTAGCAG CTTTTGACTGCTGGCGAAAGGCCAAAGACAAAGGTAAAGCCGCCGTTTTTTGTTCTGATTACCACTTACCTGTTGGTACCATGAAAATGCTTTCCAGTAT GCGTAAGCAGCTCCACGAGGAGCTTATTCGTCACGGTCTTATACCGGAAGATGTCTCGACCTGTAACGGTAACGCATGTGATCCCAGCATAATCGCTGCT GTTCTTGTGGCTAGCATGTATCCCAATGTCGGAAAAGTCTTGCCGCCTAAAGACGATAAACGCGGGGTAATACAGACGGCTGATGGTGCGAAAGTCCGGT TGAATAATTTTTCCCTTTGTGGAAAATTGATGTCTACTAAGTACGATGTCTGCCCTCTTGTGGTTTATGATGAGGTAACTCGCGGAGATATGGGTATGCG TATAATGAGCTGTACTGTTGTTGGCCCGGTCCCGCTGGTACTTCTTGCTACAGAAATAGCAGTTGCTACTGCAAATGATGATAATACTGATGGTGATAAT AAAGACGGAAAGAATGATGCTGAGAACAAAACTGATGATGATGGAATGGAAATCGATGATCTTACCGGTCAGAAAATCATGTCCGCCCCTGATAATCCCG TGACTATTGTTATGGATAGATGGCTTCATTTGAAATCGAAAGCGATCGATGTTGCTCAGATTTACTGCTTGAAAGAGCGGTTATCTGCTGCAATCATATT CAAAGTAAGTAATCCCCGAAAGTCCCTTCCACCTGCGCTTAAAGCCTCGATGCAAGCAATAGCTCGTGTTCTCTCTTGCGATGGGCTGGCTGGGATGCCC TTGCTGAACCCTGAGATTTCGAAGATACAGTCCACGTGTCAAAACCTGGTTGCACGCTCAGATCTCCTCCTCCTCAACTTCACCCCAGCTGCTGCTGCTG TGGCAGTTCTAGATCTCCACCCGATCAGCCATCTGGGACCCGCCACACACCCGCTAATCATCCGCCACGTGGACTTCCAGCGATGCAGGGGAGGAAACCA TGGTGGGGAAGAAAGCAGAGCCATGAATCATCATCATAATCATTACCTGGCCGATTGGAGTAGCTTCGATCAGCCTGATCATCTTCTCTCTCACAAGAAA TCAACTGGGGGAGATAATAACGAGCTAGTGGAGCTGCTATGGAGAGACGGCCAGGTGGTTCTGCAAACCCAGACGCCCAAAAGAATCATCAATCACAACA ATAATAACCCGCTGAGTGACTTGATCCAGGATGATGAAACCGTTTCCTGGATCCATTACCCGTTTCCAGATGCAGCCGCCGCCGCCGACGAAACAGAGTT CTGCTCTAATGTCCTGTCGGAATTCCCTGACTTTCCCGCCAGCGGCGCGCCTGATCCAAACGAGGGGATTTCGAAGCAGCCGACAAATCATCATCAACAA CAGGAAGTTGTTGGGAAGGAGGGTTCGGTTATGACAGTTGGTTCCAGCAACCGATTTCCAGTTCCTCCTACTCAGGGATTTCCGACTGCCGCCAAAAAGA CGCCTCCTTTTTCGGAGAGGAAGACGGCGGCGACGGGTACTTCTTCCTCCGGTGGGTCTGGATCAGGGGATGGCAGTACGTTTAGTAAGATTGGTGGCAA AAGGAAGAGGTCGTTGGATTTTAATGAAGAGTCCGAGTGCCAGAGTGAGTCTGCTGAGCTGGATCAATCATCCGGGTTGAACAAGGCGGTGAAGCTATCA AAATCGGGTCGAAGGGCTCGTGCTGCTGAAGTTCATAACCTCTCAGAAAGGCGAAGAAGAGACAGAATCAATGAGAAGATGAAAGCTTTGCAAGAACTTA TCCCAAACAGCACCAAGACAGACAAGGCATCAATGCTAGATGAGGCAATTGACTACCTGAAGTCACTCCAACTGCAGCTCCAGGTAATGTGGATGGGTAG TGGGATGGCAGCACAAGGAGTAATGTTTCCAGGAATGCAGCATTACATGTCCAGGTTGGGAATGGGGATGGGTCTTGGAATGGGATTTGGTATGACTGGG CACCCACCAGTACCACCACATATCTCTGGTGGGATCCCATTGATGAATAACCACCACCAACCATCATCATCATCATCACATTCACACCAAGCTGTTACCC AATTGGTCAATAATCATAATAATAACATCAGGAGTGACCACCAGATCCAGCACCACAACAACCACATTTCTCAAGCAGTAGCAGCACAGGCTGCTTTCTC TGACCAGTATGCACATTTAATGGCCTTTCATCTCCAACCTACTCCCTCCTCTACTCAGTTGGCCGACCAAAGATTTGCTGATACACGGTGGTTGCTTGGA TTACAAGATACGTCTTGGAATGTGCCTATGCTCTGCTGTAATTACCTACGTACCCTGCATTTCTCTGGCTTCTACGCAGCTTCAATGGATCAGAAAGGGA GCAGGGCTGGCCGAGCATTTCAACAATGGAGAAGTGATTACTATTGTAAAGCTCAAGAATTTACCTCTGTATTGTTTATGGGGGGGAATTCCCTCTGA
AA sequence Show only first row Show all	>Lus10020727 pacid=23140828 polypeptide=Lus10020727 locus=Lus10020727.g ID=Lus10020727.BGIv1.0 annot-version=v1.0 MARMKGQKGQKGKSLWGKVNHVPKENRAHIHELLRTFQASNEPGILISIVSYKLELNCRTGNQRCVSVFKTPGKEPKNKSTGKQQKKEKNNENLSCLTLS EQSQMILQDLFSRYPPEDEDLGSRLAQKNRSKAGQKRGDSMFSSPLISKEDIRKKVELLSSKLKKDARFRKTFEARSKLPIAAFSEVIRSTVDSNQVVLI SGETGCGKTTQVPQMLLDHLWSKGEVGKIVCTQPRRISAMSVADRISQERGQTTGDDVGYKASIKYHIRLESKGSRNSSIVFCTNGILLRVLVSGGTSLS GPSSKRGEELSGISHIIVDEIHERDRHSDFMLTVIRDLLPLYPHLRLILMSATLDAERFAQYFGGCPIIRVPGFTFPVTALYLEDALSILKSSNGNHPDS SMQDSPNDLSKEEKAALDEAIHLAWFNDEFDLLMDLVSSGGSPNVYNYQHSSTGLTPLMVFAGKGRVGDVCMLLSVGANHGLKNKDGMTALALAERENQQ EVAGVLKGHICSALCDPSEHQALLDKYLAEVDPDLIDVMLIERLLKKICQDSRDGAIIVFLPGWDDINKIRKRLLENSFFKDPSKFLIISLHSMVPPAEQ KKVFDRPRLGCRKIVLSTNIAESSITIDDVVYVIDSGRMKEKSYDPFSNVSTLQTSWISKASAKQREGRAGRCQPGICYHLFSKFRAASLPDFQVPEIRR IPIDELCLQVKLLDPSCKIESFLLKTMDPPYPESIANAIGALEELGALSPGEQLTELGKTLGRLPVHPLISKMLLFGVLMNCLDPALTIACAADYRSPFM LPISPDEKKKANDRKFELGSVYGGFSDQLAVVAAFDCWRKAKDKGKAAVFCSDYHLPVGTMKMLSSMRKQLHEELIRHGLIPEDVSTCNGNACDPSIIAA VLVASMYPNVGKVLPPKDDKRGVIQTADGAKVRLNNFSLCGKLMSTKYDVCPLVVYDEVTRGDMGMRIMSCTVVGPVPLVLLATEIAVATANDDNTDGDN KDGKNDAENKTDDDGMEIDDLTGQKIMSAPDNPVTIVMDRWLHLKSKAIDVAQIYCLKERLSAAIIFKVSNPRKSLPPALKASMQAIARVLSCDGLAGMP LLNPEISKIQSTCQNLVARSDLLLLNFTPAAAAVAVLDLHPISHLGPATHPLIIRHVDFQRCRGGNHGGEESRAMNHHHNHYLADWSSFDQPDHLLSHKK STGGDNNELVELLWRDGQVVLQTQTPKRIINHNNNNPLSDLIQDDETVSWIHYPFPDAAAAADETEFCSNVLSEFPDFPASGAPDPNEGISKQPTNHHQQ QEVVGKEGSVMTVGSSNRFPVPPTQGFPTAAKKTPPFSERKTAATGTSSSGGSGSGDGSTFSKIGGKRKRSLDFNEESECQSESAELDQSSGLNKAVKLS KSGRRARAAEVHNLSERRRRDRINEKMKALQELIPNSTKTDKASMLDEAIDYLKSLQLQLQVMWMGSGMAAQGVMFPGMQHYMSRLGMGMGLGMGFGMTG HPPVPPHISGGIPLMNNHHQPSSSSSHSHQAVTQLVNNHNNNIRSDHQIQHHNNHISQAVAAQAAFSDQYAHLMAFHLQPTPSSTQLADQRFADTRWLLG LQDTSWNVPMLCCNYLRTLHFSGFYAASMDQKGSRAGRAFQQWRSDYYCKAQEFTSVLFMGGNSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10020727 [exp]	0	1
AT2G47910		CRR6	chlororespiratory reduction 6 ...		Lus10038104 [exp]	1.7	0.8958
AT3G09150		ATHY2, GUN3, HY...	GENOMES UNCOUPLED 3, ARABIDOPS...		Lus10009713 [exp]	2.0	0.8950
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10040917 [exp]	3.5	0.8912
AT1G17430			alpha/beta-Hydrolases superfam...		Lus10012409 [exp]	3.9	0.8569
AT1G77690		LAX3	like AUX1 3 (.1)		Lus10025628 [exp]	4.0	0.8628
AT5G09690		MRS2-7, ATMGT7	ARABIDOPSIS THALIANA MAGNESIUM...		Lus10024860 [exp]	4.0	0.8506
AT5G47610			RING/U-box superfamily protein...		Lus10025563 [exp]	4.2	0.8551
AT4G15520			tRNA/rRNA methyltransferase (S...		Lus10034004 [exp]	5.7	0.7984
					Lus10032559 [exp]	6.6	0.8447
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10030908 [exp]	7.2	0.8416

Compare expression of checked genes

Lus10020727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.