Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029807 [exp] 251 / 4e-86 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020728 pacid=23140854 polypeptide=Lus10020728 locus=Lus10020728.g ID=Lus10020728.BGIv1.0 annot-version=v1.0 ATGTACAGAAACATGAACAATTTCCCACCAAAAGTAGCACTACATGGGCCGCCTTCACAAAGGGAAGACCAAGCTGATGACGATGTACCAAGACGATTCG AAGACGATCATCATAAGTATGAATCCAGCAGCAGGCTTCAGACTTTATCGATCATCTCCGACGGCAATGAAACCAACAGCAGCAGTACTATAGTCAGATC ATCACTTCCCCCACCGTCATTACTCGAACAAGTCGTCGACAGTAAATCGTTACAAGTACAGGGTCGTCCAACAAGAAATTTTGATGGAAGATTGATAATG GGAGATGGTGAAGGAAGAAGTAGCAATGATCATGAAGATGAGCCCGATTGCGACCTTTCACTCTGTTTTACGACAACATCGACGATTATGCAACATGGAA AAGAAGATAATCGAAGCTGTATGGGTTTGATCAATGGTGCCGACGATAAATTTGGAGTAGTGTCACAAAATATGAACTATGTGAACAACAAGAGATTTTA TGAGTTCTTGTCTCTTGGGACAGATAACCACATGAACTTGGATTTAACCATCTAG
AA sequence Show only first row Show all	>Lus10020728 pacid=23140854 polypeptide=Lus10020728 locus=Lus10020728.g ID=Lus10020728.BGIv1.0 annot-version=v1.0 MYRNMNNFPPKVALHGPPSQREDQADDDVPRRFEDDHHKYESSSRLQTLSIISDGNETNSSSTIVRSSLPPPSLLEQVVDSKSLQVQGRPTRNFDGRLIM GDGEGRSSNDHEDEPDCDLSLCFTTTSTIMQHGKEDNRSCMGLINGADDKFGVVSQNMNYVNNKRFYEFLSLGTDNHMNLDLTI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10020728 [exp]	0	1
AT2G14095			unknown protein		Lus10001300 [exp]	4.7	0.9661
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10035480 [exp]	6.5	0.9602
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10030927 [exp]	7.4	0.9461
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10035479 [exp]	8.0	0.9597
AT2G31945			unknown protein		Lus10013740 [exp]	11.5	0.9480
AT5G36930			Disease resistance protein (TI...		Lus10014671 [exp]	13.4	0.9531
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10010534 [exp]	14.8	0.9598
AT3G50910			unknown protein		Lus10028325 [exp]	15.9	0.9481
AT1G71870			MATE efflux family protein (.1...		Lus10038987 [exp]	19.7	0.9212
AT4G30230			unknown protein		Lus10041416 [exp]	25.8	0.9129

Compare expression of checked genes

Lus10020728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.