Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17230 490 / 1e-173 PSY PHYTOENE SYNTHASE (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029809 [exp] 560 / 0 AT5G17230 491 / 3e-172 PHYTOENE SYNTHASE (.1.2.3) Lus10001416 [exp] 528 / 0 AT5G17230 545 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Lus10001050 [exp] 514 / 0 AT5G17230 535 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Lus10039186 [exp] 399 / 6e-138 AT5G17230 442 / 1e-154 PHYTOENE SYNTHASE (.1.2.3) Lus10013753 [exp] 396 / 6e-137 AT5G17230 446 / 4e-156 PHYTOENE SYNTHASE (.1.2.3) Lus10014576 [exp] 70 / 5e-15 AT5G17230 69 / 1e-15 PHYTOENE SYNTHASE (.1.2.3) Lus10027418 [exp] 48 / 6e-07 ND 37 / 0.001
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G205800 [exp] 525 / 0 AT5G17230 549 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Potri.002G056800 [exp] 515 / 0 AT5G17230 555 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Potri.017G138900 [exp] 495 / 2e-175 AT5G17230 630 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Potri.001G007700 [exp] 416 / 4e-145 AT5G17230 443 / 4e-155 PHYTOENE SYNTHASE (.1.2.3) Potri.003G217950 [exp] 413 / 7e-144 AT5G17230 443 / 5e-155 PHYTOENE SYNTHASE (.1.2.3) Potri.003G218000 [exp] 387 / 9e-134 AT5G17230 411 / 2e-142 PHYTOENE SYNTHASE (.1.2.3) Potri.004G081466 [exp] 254 / 1e-84 AT5G17230 260 / 9e-87 PHYTOENE SYNTHASE (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF00494 [flax] [poplar] SQS_PSY Squalene/phytoene synthase
Representative CDS sequence Show only first row Show all	>Lus10020729 pacid=23140939 polypeptide=Lus10020729 locus=Lus10020729.g ID=Lus10020729.BGIv1.0 annot-version=v1.0 ATGAACGAACTCGAGTTCTCATGCCTGTCTGAATCTGATCCACGGCAGCAGAGTGGTGGTGAATCTCTCCTAACACCTAGCGTATCAACTGCAATGCTCA ACGGGAGTCGAGTTGCATATGTACTCTCCGGTATCCTCTCTCCCAAGCTATTTGGAGGCCTGTACCAGCAGCCCTTAACTCCGCCCGATGTTGGACGTCG TGGAGGAGTGAGAGCCAAACCATTTTTTAACGATGCACCAAATACCTTATTGTATTTGAGAAACCATTTTAAATTGTTTAATTCTCGGAGGAGTGGACAA GGAACATTGCTGATGACACCGGAGAGGAAGAAAGCTGTATGGGCGATTTATGTTTGGTGCAGAAGGACTGACGAGCTTGTAGACGGGCCAAACGCAACTC ACATCACACCCAAAGCGCTTGATAGATGGGAGACGAGACTGAATGACCTTTTCGAAGGCCGTCCATATGACATGTTTGATGCTGCTCTGTCCGATACAGT CGCGAAGTACCCTGTCGATATCCAGCCTTTCAAGGACATGATAGAAGGAATGAGGATGGATTTACGAAAGACGCGATACAACAACTTTGATGAGCTCTAC CTATACTGCTACTATGTTGCCGGCACAGTTGGTCTAATGAGTGTTCCGGTAATGGGAATCGACCCTGAATCGAAAGCTTCAACCGAGAGCGTCTACAATG CTGCATTGGCATTGGGGATCGCCAACCAACTCACCAACATACTCAGAGATGTTGGAGAAGATGCGAGGAGAGGAAGGATATATCTGCCGCAGGACGAGCT GAGGAAAGCCGGGCTATCAGACGAAGACATATTCAAAGGGAAAGTGACTGACAAGTGGAGGAGCTTCATGAAAGGGCAGATAAAGAGGGCGAGGATGTTC TTCGACGAGGCGGAGAAAGGTGTTGGAGAACTGAACGGGGCGAGCAGATGGCCGGTGTGGGCGTCTCTGCTGCTGTATAAGCAGATACTGGACGCCATTG AAGCGAACGACTACGATAACTTCACAAAGCGAGCTTATGTTGGGAAAGCGAAGAAGTTTGCTTCTTTGCCTGTAGCCTACGGGAAGGCACTGATTGGTCC TTCTAAAAGAGCTGAATTTGCTCGGACTAACTAG
AA sequence Show only first row Show all	>Lus10020729 pacid=23140939 polypeptide=Lus10020729 locus=Lus10020729.g ID=Lus10020729.BGIv1.0 annot-version=v1.0 MNELEFSCLSESDPRQQSGGESLLTPSVSTAMLNGSRVAYVLSGILSPKLFGGLYQQPLTPPDVGRRGGVRAKPFFNDAPNTLLYLRNHFKLFNSRRSGQ GTLLMTPERKKAVWAIYVWCRRTDELVDGPNATHITPKALDRWETRLNDLFEGRPYDMFDAALSDTVAKYPVDIQPFKDMIEGMRMDLRKTRYNNFDELY LYCYYVAGTVGLMSVPVMGIDPESKASTESVYNAALALGIANQLTNILRDVGEDARRGRIYLPQDELRKAGLSDEDIFKGKVTDKWRSFMKGQIKRARMF FDEAEKGVGELNGASRWPVWASLLLYKQILDAIEANDYDNFTKRAYVGKAKKFASLPVAYGKALIGPSKRAEFARTN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10020729 [exp]	0	1
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10029809 [exp]	1.0	0.9485
AT5G17170		ENH1	enhancer of sos3-1, rubredoxin...		Lus10002349 [exp]	2.0	0.9239
AT4G31560		HCF153	high chlorophyll fluorescence ...		Lus10039571 [exp]	2.4	0.9227
AT5G64460			Phosphoglycerate mutase family...		Lus10007093 [exp]	3.0	0.9020
AT3G05170			Phosphoglycerate mutase family...		Lus10032291 [exp]	3.2	0.9178
AT1G66130			NAD(P)-binding Rossmann-fold s...		Lus10039898 [exp]	4.0	0.9209
AT4G10300			RmlC-like cupins superfamily p...		Lus10035659 [exp]	5.5	0.9101
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Lus10012339 [exp]	5.7	0.8921
AT3G05170			Phosphoglycerate mutase family...		Lus10024659 [exp]	7.0	0.9094
AT1G16080			unknown protein		Lus10024094 [exp]	9.4	0.9083

Compare expression of checked genes

Lus10020729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.