Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45890 392 / 2e-136 SAG12 senescence-associated gene 12 (.1) AT3G48340 368 / 5e-127 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT3G19390 369 / 4e-126 Granulin repeat cysteine protease family protein (.1) AT5G50260 365 / 5e-126 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT5G43060 349 / 4e-118 Granulin repeat cysteine protease family protein (.1) AT3G19400 345 / 6e-118 Cysteine proteinases superfamily protein (.1.2) AT4G35350 344 / 1e-117 XCP1 xylem cysteine peptidase 1 (.1.2) AT3G48350 341 / 2e-116 CEP3 cysteine endopeptidase 3, Cysteine proteinases superfamily protein (.1) AT1G47128 344 / 4e-116 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT2G27420 340 / 6e-116 Cysteine proteinases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020723 [exp] 667 / 0 AT5G45890 398 / 3e-139 senescence-associated gene 12 (.1) Lus10020734 [exp] 664 / 0 AT5G45890 390 / 4e-136 senescence-associated gene 12 (.1) Lus10028501 [exp] 662 / 0 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10032406 [exp] 658 / 0 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10006542 [exp] 658 / 0 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10020722 [exp] 657 / 0 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10026362 [exp] 657 / 0 AT5G45890 396 / 2e-138 senescence-associated gene 12 (.1) Lus10026073 [exp] 652 / 0 AT5G45890 393 / 5e-137 senescence-associated gene 12 (.1) Lus10028502 [exp] 648 / 0 AT5G45890 394 / 3e-137 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G088600 [exp] 543 / 0 AT5G45890 406 / 8e-142 senescence-associated gene 12 (.1) Potri.005G089100 [exp] 542 / 0 AT5G45890 405 / 1e-141 senescence-associated gene 12 (.1) Potri.007G075300 [exp] 538 / 0 AT5G45890 406 / 6e-142 senescence-associated gene 12 (.1) Potri.007G076100 [exp] 537 / 0 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075900 [exp] 537 / 0 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G076000 [exp] 534 / 0 AT5G45890 407 / 2e-142 senescence-associated gene 12 (.1) Potri.011G064900 [exp] 497 / 3e-178 AT5G45890 401 / 3e-140 senescence-associated gene 12 (.1) Potri.013G118200 [exp] 474 / 2e-169 AT5G45890 387 / 2e-135 senescence-associated gene 12 (.1) Potri.007G075100 [exp] 472 / 1e-168 AT5G45890 371 / 4e-129 senescence-associated gene 12 (.1) Potri.013G126100 [exp] 470 / 2e-167 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10020730 pacid=23140864 polypeptide=Lus10020730 locus=Lus10020730.g ID=Lus10020730.BGIv1.0 annot-version=v1.0 ATGGCCTCTCCAAACTGCAAATTCATTCTATTGGCTTCAATATTCATCCTGGGAGCTCTGGCTTCTCACACCACGGCACGCTATACACTTTCCGAAGCTT CCATCCGACTCAGATATGACCAATGGATGACTCGTTACGGACGAGTCTACGATAGTCCCACTGAAAAGGAGGCTCGATTCCGGATCTTCAAAGACAATGT AGCTTTCATCGACTCTTCCAATGCTGCTGGCGATAAGCCTTACAAGCTTGGAGTCAATCAGTTTGCTGATTTGACTAACGACGAGTTCAAAGCCTCTCGA AACGGGTTCAAGGGACACATGTGCTCTCCGCAACAGGGACCATTTAGGTACGAAAACTTGAGCGCAGTCCCAACGACAATGGACTGGAGGAAGAAGGGAG CAGTCACTCCTATCAAAGACCAGGGTCAGTGCGGAAGCTGTTGGGCATTTTCGGCCGTGGGAGCAATGGAAGGAATCCACCAGCTCAGTACTGGCAAATT GGTGTCCCTTTCTGAACAGGAATTGGTTGACTGCGACACCAAGGGAGAGGACCAAGGATGTAACGGTGGGTTGATGGATGATGCGTTCAAGTTCGTTATT CAAAACAAGGGCTTGACCACCGAGACCAACTACCCTTATGACGCTGCTGACGGAACCTGCAATGCTAACAAAGAAAGCAGCAGTGCAGCCAAGATTTCAG GGTACGAAGATGTGCCAGCCAACAACGAGGCCGCATTGATGAAGGCTGTGGCGAGCCAACCGATTTCAGTGGCAATTGATGCAGGGGATTCGTCCTTCCA ATTCTACTCGAGCGGGATCTTTACTGGAGAATGCGGAACTGCGCTAGACCATGGAGTGACAGCAGTCGGGTATGGAGAAAGCGGTGGGATGAAGTACTGG TTGGTGAAGAATTCGTGGGGAGCGCAGTGGGGAGAAGCTGGATACATTCGTATGCAGAAAGATGTTACCGCTAAAGAAGGTCTCTGCGGAATTGCTATGC AAGCTTCCTATCCCACTGACTCCCACTGCCTAAGTGAAAAGATATAG
AA sequence Show only first row Show all	>Lus10020730 pacid=23140864 polypeptide=Lus10020730 locus=Lus10020730.g ID=Lus10020730.BGIv1.0 annot-version=v1.0 MASPNCKFILLASIFILGALASHTTARYTLSEASIRLRYDQWMTRYGRVYDSPTEKEARFRIFKDNVAFIDSSNAAGDKPYKLGVNQFADLTNDEFKASR NGFKGHMCSPQQGPFRYENLSAVPTTMDWRKKGAVTPIKDQGQCGSCWAFSAVGAMEGIHQLSTGKLVSLSEQELVDCDTKGEDQGCNGGLMDDAFKFVI QNKGLTTETNYPYDAADGTCNANKESSSAAKISGYEDVPANNEAALMKAVASQPISVAIDAGDSSFQFYSSGIFTGECGTALDHGVTAVGYGESGGMKYW LVKNSWGAQWGEAGYIRMQKDVTAKEGLCGIAMQASYPTDSHCLSEKI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020730 [exp]	0	1
AT1G74090		SOT18, ATSOT18,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Lus10003069 [exp]	7.1	0.8230
AT5G36930			Disease resistance protein (TI...		Lus10007809 [exp]	12.7	0.8257
AT2G22475		GEM	GL2-EXPRESSION MODULATOR, GRAM...		Lus10010279 [exp]	13.8	0.8317
AT2G17700		STY8	serine/threonine/tyrosine kina...		Lus10004153 [exp]	30.2	0.8177
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10020191 [exp]	31.5	0.8099
					Lus10019824 [exp]	31.7	0.7375
AT5G36930			Disease resistance protein (TI...		Lus10007810 [exp]	34.5	0.7987
AT3G04030	GARP		Homeodomain-like superfamily p...		Lus10002629 [exp]	37.9	0.8066
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040735 [exp]	42.2	0.8042
AT1G71692	MADS	XAL1, AGL12	XAANTAL1, AGAMOUS-like 12 (.1)		Lus10001277 [exp]	45.3	0.6678

Compare expression of checked genes

Lus10020730 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.