Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45890 344 / 9e-118 SAG12 senescence-associated gene 12 (.1) AT2G27420 334 / 8e-114 Cysteine proteinases superfamily protein (.1) AT3G49340 325 / 2e-110 Cysteine proteinases superfamily protein (.1) AT1G29090 318 / 2e-107 Cysteine proteinases superfamily protein (.1) AT2G34080 313 / 2e-105 Cysteine proteinases superfamily protein (.1) AT5G50260 303 / 3e-101 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT4G35350 301 / 9e-101 XCP1 xylem cysteine peptidase 1 (.1.2) AT1G20850 298 / 3e-99 XCP2 xylem cysteine peptidase 2 (.1) AT1G29080 293 / 7e-98 Papain family cysteine protease (.1) AT3G48340 292 / 6e-97 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006542 [exp] 392 / 2e-136 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10003275 [exp] 391 / 3e-136 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10002301 [exp] 390 / 6e-136 AT5G45890 397 / 1e-138 senescence-associated gene 12 (.1) Lus10042295 [exp] 390 / 6e-136 AT5G45890 402 / 7e-141 senescence-associated gene 12 (.1) Lus10020722 [exp] 390 / 7e-136 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10026073 [exp] 390 / 1e-135 AT5G45890 393 / 5e-137 senescence-associated gene 12 (.1) Lus10026362 [exp] 389 / 3e-135 AT5G45890 396 / 2e-138 senescence-associated gene 12 (.1) Lus10032406 [exp] 387 / 9e-135 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10028502 [exp] 387 / 9e-135 AT5G45890 394 / 3e-137 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G089100 [exp] 380 / 5e-132 AT5G45890 405 / 1e-141 senescence-associated gene 12 (.1) Potri.005G088600 [exp] 377 / 2e-130 AT5G45890 406 / 8e-142 senescence-associated gene 12 (.1) Potri.007G075300 [exp] 376 / 5e-130 AT5G45890 406 / 6e-142 senescence-associated gene 12 (.1) Potri.007G076100 [exp] 375 / 1e-129 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075900 [exp] 375 / 1e-129 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G076000 [exp] 374 / 1e-129 AT5G45890 407 / 2e-142 senescence-associated gene 12 (.1) Potri.011G064900 [exp] 374 / 1e-129 AT5G45890 401 / 3e-140 senescence-associated gene 12 (.1) Potri.013G126100 [exp] 359 / 9e-124 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1) Potri.013G118200 [exp] 357 / 2e-123 AT5G45890 387 / 2e-135 senescence-associated gene 12 (.1) Potri.013G118400 [exp] 356 / 2e-122 AT5G45890 378 / 2e-131 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10020731 pacid=23140891 polypeptide=Lus10020731 locus=Lus10020731.g ID=Lus10020731.BGIv1.0 annot-version=v1.0 ATGGCGAAAAGGATGCTCTTCGCTTTGATGATGTTCGTTATTCTCCTAGCTCATCAAGCCATGTCGATAAGACATACATCCCCCGAAGCTGCCACGACGA CGATGAGCCTCAGGCACGAGCAGTGGATGTCGAGTTTCGGACGGGAGTACAAGGACGAGAAGGAGAAGGAGCTCCGGTTCGAGATATTCAAGGTCAATGC TGCGGCCATTGACTCTTTCAATCGCAACAAGTCAACGTCTTTCACTCTTGCAGTCAACGAGTTCGCTGATCTAACCGACCAGGAATTCGAAGCGACCAAA ACTGGATTGCTATTCTCCAAGGGATCAATTAGACCCTTGTCTAATTATTCGACTCAGCAGCAGGGAAGCTTTAGATATGCGAACGTGATGCAAGTGCCAA TCACGATGGACTGGAGACAAAAAGGAGCGGTGACTCCGGTAAAGAACCAAGGTGGATGCGCATGTTGTTGGGCATTTTCGGCCGTGGCAGCGGTGGAAGG GATCAACAAGCTTAACAGAGGGATTTTGGTGTCTCTTTCCGAGCAACAATTGGTGGATTGTGACTACCAAGGAAACAACAAAGGATGCAACGGCGGAGTG ATGGACGAAGCGTATGGGTTTATTGTCCGAAACAACGGCCTCACGACCGAATCCAACTACCCTTACAAGGCTGCAGAAAGCGGATCGTGCAACGTCAGCC CCAACACGCCACCGGCCGCACAACTCATAGGGTTCGAGGATGTGCCGGCCAATGACGAAATTTCGTTGCTCAAGGCCGTGGCCAACCAGCCCGTTTCGGT CGGGATTCGCGGGAGTGATAACGCGTTCAGGTTTTACAAGGGCGGGATCCTGACACCTGACGTGTGCGGGACCGACACAAACCATGCGGTGACGGTGGTT GGGTACGGGGAGAGCGATGGGAGGAAGTACTGGCTGGCGAAAAACTCGTGGGGGACTCAGTGGGGAGAGCAAGGTTACGTTCGATTCGAGAGAGGTATCA TGGATACGAGAGGGGTTTGTGGGCTTGCTCAGTGGGCTTCTTACCCTACTAATACTCCTGCATAG
AA sequence Show only first row Show all	>Lus10020731 pacid=23140891 polypeptide=Lus10020731 locus=Lus10020731.g ID=Lus10020731.BGIv1.0 annot-version=v1.0 MAKRMLFALMMFVILLAHQAMSIRHTSPEAATTTMSLRHEQWMSSFGREYKDEKEKELRFEIFKVNAAAIDSFNRNKSTSFTLAVNEFADLTDQEFEATK TGLLFSKGSIRPLSNYSTQQQGSFRYANVMQVPITMDWRQKGAVTPVKNQGGCACCWAFSAVAAVEGINKLNRGILVSLSEQQLVDCDYQGNNKGCNGGV MDEAYGFIVRNNGLTTESNYPYKAAESGSCNVSPNTPPAAQLIGFEDVPANDEISLLKAVANQPVSVGIRGSDNAFRFYKGGILTPDVCGTDTNHAVTVV GYGESDGRKYWLAKNSWGTQWGEQGYVRFERGIMDTRGVCGLAQWASYPTNTPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020731 [exp]	0	1
AT5G24070			Peroxidase superfamily protein...		Lus10027049 [exp]	1.7	1.0000
					Lus10008789 [exp]	2.8	1.0000
AT4G35500			Protein kinase superfamily pro...		Lus10016690 [exp]	5.5	1.0000
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10014217 [exp]	6.0	1.0000
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10036470 [exp]	7.5	1.0000
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10036896 [exp]	9.4	1.0000
AT5G14760		AO	L-aspartate oxidase (.1)		Lus10018901 [exp]	10.4	1.0000
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10039345 [exp]	11.2	1.0000
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10027891 [exp]	11.7	1.0000
					Lus10005761 [exp]	14.7	1.0000

Compare expression of checked genes

Lus10020731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.