Plant FIBer expression Database

Lus10020732 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G06660 287 / 1e-91 JASON JASON, unknown protein
AT2G30820 197 / 5e-58 unknown protein
AT1G04030 64 / 7e-11 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001051
[exp]
493 / 2e-171 AT1G06660 283 / 6e-90 JASON, unknown protein
Lus10001417
[exp]
406 / 3e-138 AT1G06660 228 / 3e-69 JASON, unknown protein
Lus10003912
[exp]
72 / 7e-14 AT4G14180 68 / 8e-13 putative recombination initiation defect 1 (.1)
Lus10003613
[exp]
67 / 1e-11 AT1G04030 211 / 1e-63 unknown protein
Lus10008231
[exp]
56 / 4e-08 AT1G04030 202 / 1e-59 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G057000
[exp]
452 / 1e-155 AT1G06660 325 / 7e-106 JASON, unknown protein
Potri.005G205700
[exp]
431 / 1e-147 AT1G06660 275 / 6e-87 JASON, unknown protein
Potri.002G258501
[exp]
63 / 2e-10 AT1G04030 172 / 1e-48 unknown protein
Potri.013G047700
[exp]
47 / 1e-05 AT1G04030 147 / 1e-39 unknown protein
PFAM info
Representative CDS sequence
>Lus10020732 pacid=23140935 polypeptide=Lus10020732 locus=Lus10020732.g ID=Lus10020732.BGIv1.0 annot-version=v1.0
ATGGCCTGTTTCTTCGACTGCTTCCGCGGCAGAGACGGCAGTCTCGGCAGACGCCGCCATCCTCACCTCGTCTCTCCGGCACGAACGCCGGCGCTGATTG
TTTTGATTCTTGTTTCGAGTGGCGATCAGGAAGCTGGGATGTCGAAGAACCGTTTAGCATCATTATTCCTGTCAGAAGCAGAAACGGAAGAGTCTCCAGC
TACGAGCAAGGGAAATCTATCTTGGGGGTCTCCTCAAACTCAGAAAGAGCTTAGGGACGAGGCAAGGTTTCTGAAAGCTTGCGGTACATTGCCTGAGACT
CCCGCTGAATTCCGGAAACCATCTCAGAAGCTGAAAAGTTCACCATCTGCTAATAATGGCTCAGAAAATTCGGACTATCACTCTTGGCTCCCGAACTCAT
CCACCAAGAAACTGTTGGCCGACATGCAAACTGATGAGCCTTCTACCCCTATCAAGAGTGTTGAAGAGCTGGGAAGGCCTTCTATTTCTTCAGATCAAGC
ACCCAGCAGTTGCATCTCCTATGGGGTCTCTGCGCGTTCCACAGCAGACAATGGAGGAACATATTTGGAAACAGTGTCTAAGGTTCACAAGGAAGAGACC
GATGATGCATCTTCAGCTACTCCATTCGTTGCAGTCACCAATACTCAACTAAGGAATAAGTCTGTTCACTTCCAATGTGATTCTGATACATCCTCCTCTA
GAGGCTCTTCTGGAACCAGTGGGGATACTATGAAGAACTCTGACCGATTTGGGGATCTCAGCGTAACTAAGCATTCCACCAGACCAACCCCGCTAAAACT
TTCCAGTGAGATGCAAACACCAGGAACTGTCTTCTCAACAAACCTGGAAACTTTAGGAAATGGAAAGGCCAGGGTCAGGTCCCAATACGTTTGCTCAATC
TTGCAACCTATTGAAAATGCTTCCCAGTGGCAGGAACTGAAAGAAGAAGACCCCGCAAATTCGCAAATCAACCAGCTGGAACAATCTCTTGATCAGCAGT
CCGAAAGTACAACCCCCAACAGAGAAGCAGCAGTCGCTAGAACTTCCCCTTCAAAAGATTCGAAAGTGGAAGCAAGCCTGTCAGCTTGGCTGAAGCCGGT
TTCTCAGACCAATCGATATAGTGATAATCTTGATCCCAGGAAAAAGTTCCATGTGGCTAAAACTCCTGGAGACAGACCAATCATTGGTATGGTTGCTGCT
CACTGGAACGAGGATCATCAGCCTACTGAAATCTCCCCAAAGTGGTGGGATGGGAATGGCATCCCGAATTCAACTAACAAATACAAGGAGGATCAAAAGG
TAAGCTGGCATGCAACACCATTTGAGGAGAGGCTGGAGAAAGCCTTGTCCGAAGAAACCTTGATTTCACAAAAAAAGCCTGTCAGCGGTAGTCTGATATC
CTTCGACGAGGGGGAAGAAACCGATACTGCATTCTCGCAGCAACCAGCAGCTACATCACATTCCAATTCAGTTGTTTCATACTGA
AA sequence
>Lus10020732 pacid=23140935 polypeptide=Lus10020732 locus=Lus10020732.g ID=Lus10020732.BGIv1.0 annot-version=v1.0
MACFFDCFRGRDGSLGRRRHPHLVSPARTPALIVLILVSSGDQEAGMSKNRLASLFLSEAETEESPATSKGNLSWGSPQTQKELRDEARFLKACGTLPET
PAEFRKPSQKLKSSPSANNGSENSDYHSWLPNSSTKKLLADMQTDEPSTPIKSVEELGRPSISSDQAPSSCISYGVSARSTADNGGTYLETVSKVHKEET
DDASSATPFVAVTNTQLRNKSVHFQCDSDTSSSRGSSGTSGDTMKNSDRFGDLSVTKHSTRPTPLKLSSEMQTPGTVFSTNLETLGNGKARVRSQYVCSI
LQPIENASQWQELKEEDPANSQINQLEQSLDQQSESTTPNREAAVARTSPSKDSKVEASLSAWLKPVSQTNRYSDNLDPRKKFHVAKTPGDRPIIGMVAA
HWNEDHQPTEISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEETLISQKKPVSGSLISFDEGEETDTAFSQQPAATSHSNSVVSY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G06660 JASON JASON, unknown protein Lus10020732
[exp]
0 1
AT5G13960 SDG33, KYP, SUV... SET DOMAIN PROTEIN 33, KRYPTON... Lus10041515
[exp]
2.4 0.9584
AT4G17000 unknown protein Lus10010744
[exp]
4.0 0.9619
AT5G63950 CHR24 chromatin remodeling 24 (.1) Lus10015690
[exp]
5.7 0.9343
AT5G67270 ATEB1C, ATEB1H1 ATEB1-HOMOLOG1, MICROTUBULE EN... Lus10011508
[exp]
7.2 0.9582
AT5G06150 CYC1BAT, CYCB1;... cyclin B 1;2, Cyclin family pr... Lus10027331
[exp]
9.5 0.9519
AT5G51600 ATMAP65-3, PLE PLEIADE, ARABIDOPSIS THALIANA ... Lus10015684
[exp]
9.5 0.9582
AT2G42110 unknown protein Lus10029282
[exp]
13.0 0.9256
AT2G32590 EMB2795 EMBRYO DEFECTIVE 2795, unknown... Lus10031539
[exp]
15.1 0.9305
AT5G15510 TPX2 (targeting protein for Xk... Lus10010706
[exp]
15.5 0.9475
AT2G32590 EMB2795 EMBRYO DEFECTIVE 2795, unknown... Lus10030028
[exp]
15.6 0.9473

Lus10020732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.