Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30860 335 / 3e-118 GLUTTR, ATGSTF7, ATGSTF9 glutathione S-transferase PHI 9 (.1.2) AT2G30870 309 / 3e-108 ERD13, ATGSTF4, ATGSTF10 EARLY DEHYDRATION-INDUCED 13, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 10, glutathione S-transferase PHI 10 (.1) AT3G03190 212 / 1e-69 ATGSTF6, ATGSTF11 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) AT5G17220 201 / 1e-65 GST26, TT19, ATGSTF12 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) AT3G62760 182 / 5e-58 ATGSTF13 Glutathione S-transferase family protein (.1) AT4G02520 174 / 9e-55 GST2, ATPM24.1, ATGSTF2 glutathione S-transferase PHI 2 (.1) AT2G47730 173 / 5e-54 GST6, ATGSTF5, ATGSTF8 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) AT2G02930 171 / 6e-54 GST16, ATGSTF3 GLUTATHIONE S-TRANSFERASE 16, glutathione S-transferase F3 (.1) AT1G02930 169 / 4e-53 ATGST1, GST1, ERD11, ATGSTF3, ATGSTF6 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) AT1G02920 166 / 1e-51 ATGST11, GST11, ATGSTF8, ATGSTF7 ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 11, glutathione S-transferase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029815 [exp] 422 / 7e-153 AT2G30860 332 / 2e-117 glutathione S-transferase PHI 9 (.1.2) Lus10020736 [exp] 367 / 3e-131 AT2G30860 308 / 6e-108 glutathione S-transferase PHI 9 (.1.2) Lus10029816 [exp] 366 / 1e-130 AT2G30860 308 / 1e-107 glutathione S-transferase PHI 9 (.1.2) Lus10001419 [exp] 354 / 7e-126 AT2G30860 297 / 3e-103 glutathione S-transferase PHI 9 (.1.2) Lus10040393 [exp] 252 / 2e-85 AT3G03190 263 / 1e-89 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Lus10023511 [exp] 219 / 3e-72 AT5G17220 240 / 2e-80 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) Lus10004151 [exp] 215 / 6e-71 AT2G30860 194 / 1e-62 glutathione S-transferase PHI 9 (.1.2) Lus10005634 [exp] 190 / 6e-61 AT2G30860 177 / 1e-55 glutathione S-transferase PHI 9 (.1.2) Lus10001053 [exp] 182 / 2e-59 AT2G30860 152 / 8e-48 glutathione S-transferase PHI 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G138800 [exp] 261 / 3e-89 AT5G17220 265 / 1e-90 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) Potri.002G015200 [exp] 214 / 2e-70 AT3G03190 208 / 4e-68 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.002G207672 [exp] 204 / 1e-66 AT3G62760 302 / 2e-105 Glutathione S-transferase family protein (.1) Potri.002G015100 [exp] 202 / 7e-66 AT3G03190 196 / 2e-63 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.014G132200 [exp] 199 / 8e-65 AT3G62760 295 / 2e-102 Glutathione S-transferase family protein (.1) Potri.002G207093 [exp] 182 / 7e-58 AT1G02930 263 / 5e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207479 [exp] 179 / 1e-56 AT1G02930 267 / 1e-91 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207286 [exp] 176 / 8e-56 AT1G02930 263 / 4e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.005G182000 [exp] 79 / 9e-18 AT1G77290 414 / 4e-148 Glutathione S-transferase family protein (.1.2) Potri.004G232600 [exp] 75 / 2e-16 AT2G02390 306 / 2e-106 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10020735 pacid=23140859 polypeptide=Lus10020735 locus=Lus10020735.g ID=Lus10020735.BGIv1.0 annot-version=v1.0 ATGGCGGTGAAGGTGTACGGTCCAGCTTATGCTTCTCCGAAGCGAGTGATCGTCTGCCTCGTCGAGAAGGGCATCGACTTCGAGACCGTCCCCGTTGATC TCGTCAAGGGAGAGCATATGCATCCCGACTACCTCAAGCTCCAGCCCTTTGGATCTCTGCCTGTGATCCAAGACGGGGACTACACTCTCTACGAGTCAAG AGCGATCATAAGGTACTACTCGGAGAAGTACAAGACTCAGGGGACTGATCTGCTGGGGAAGACGATAGAAGAAAGAGGACTGGTTGAGCAATGGCTTGAA GTTGAAGCACACAACTACCACCCGCACGTCTACAACCTGACCCTTCACGTCATGTTCGCATCCGTTCTAGGATTCCCGGCTGACGAGAAGCTGATAAAGG AGAGCGAGGAGAAGCTTGCGAAAGTGCTGGACGTTTATGAAGAGAGGCTGTCGAAGAGCAAGTACTTGGCTGGAGATTTCTTCAGCTTGGCTGATCTTAG CCACCTCCCGTTCACTCAGTACCTTGTGGGTCCGATCGGGAAGGAGTACATGATCAAGAGCAGGAAGCATGTTAGTGCTTGGTGGGATGATATCAGCAGC AGGCCTTCCTGGAAGAAGGTTCTTGCGATGTGA
AA sequence Show only first row Show all	>Lus10020735 pacid=23140859 polypeptide=Lus10020735 locus=Lus10020735.g ID=Lus10020735.BGIv1.0 annot-version=v1.0 MAVKVYGPAYASPKRVIVCLVEKGIDFETVPVDLVKGEHMHPDYLKLQPFGSLPVIQDGDYTLYESRAIIRYYSEKYKTQGTDLLGKTIEERGLVEQWLE VEAHNYHPHVYNLTLHVMFASVLGFPADEKLIKESEEKLAKVLDVYEERLSKSKYLAGDFFSLADLSHLPFTQYLVGPIGKEYMIKSRKHVSAWWDDISS RPSWKKVLAM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10020735 [exp]	0	1
AT5G13810			Glutaredoxin family protein (....		Lus10024164 [exp]	2.4	0.9014
AT1G60710		ATB2	NAD(P)-linked oxidoreductase s...		Lus10041272 [exp]	3.7	0.8789
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Lus10040165 [exp]	4.5	0.8565
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Lus10019003 [exp]	7.1	0.8250
AT2G41410			Calcium-binding EF-hand family...		Lus10027261 [exp]	7.9	0.8394
AT4G28400			Protein phosphatase 2C family ...		Lus10039853 [exp]	8.1	0.8539
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Lus10041838 [exp]	8.1	0.8687
AT1G63290			Aldolase-type TIM barrel famil...		Lus10032052 [exp]	8.7	0.8648
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022193 [exp]	8.8	0.8486
AT1G79590		ATSYP52, SYP52	syntaxin of plants 52 (.1.2)		Lus10016577 [exp]	9.8	0.8403

Compare expression of checked genes

Lus10020735 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.