Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17290 417 / 1e-146 ATG5, APG5, ATATG5 AUTOPHAGY 5, autophagy protein Apg5 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029817 [exp] 634 / 0 AT5G17290 462 / 4e-164 AUTOPHAGY 5, autophagy protein Apg5 family (.1) Lus10017221 [exp] 0 / 1 AT1G03475 557 / 0.0 LESION INITIATION 2, Coproporphyrinogen III oxidase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G139700 [exp] 454 / 9e-161 AT5G17290 406 / 2e-142 AUTOPHAGY 5, autophagy protein Apg5 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF04106 [flax] [poplar] APG5 Autophagy protein Apg5
Representative CDS sequence Show only first row Show all	>Lus10020737 pacid=23140877 polypeptide=Lus10020737 locus=Lus10020737.g ID=Lus10020737.BGIv1.0 annot-version=v1.0 ATGGAAGAAGCGCAGAAGTACGTATGGATGGGAGCGATACCGCTGCAGATTCATCTCCACGAATCCGAAGTCACCACAGTGCCGCCACCTCCGCCTGCCC TAATCCTAGCTCCTCGGATCGGCTACTTGCCTTTGCTCCTCCATCTCATCAAGCCTCACTTCTCTTCCACTCTCCCTCCAGGATTTGACACCGTATGGTT TGAATACAAAGGATTGCCTCTCAAATGGTATATTCCTACTGGAGTTCTGTTTGACCTTCTTTGCGCCGAACCTGAAAGACCTTGGAATTTAACGATTCAT TTCAGAGGATATCCTAGTCATTTATTGATTCCTTGTGATGGTGAAGACTCCGTGAAGTGGAACTTCATCAACTCATTGAAAGAGGCAGATTATATAATTA ATGGTAATTGCAAGAATGTTATGCACATGTCTCAGTCTGATCAGATGGACCTCTGGAACTCTGTAGTTAATGCCAATATGGAAGCATTCATTCGATCAAC ATCAAAACTGAAAATTGGAACGATTGAGGATGAGTTTGCAGCCAAGGCTAGTTTGTCCTCACAAAAATCTCAAAAAATGACCGGTGAGGTAGATCCAGTT GCACAGACAAAGCCAGGTAAAGTTCCTGTTCGATTATATATCTGGAGTGTAAGCAAGGATTTTGAAGACTTGGAGGATGCACCTCCAATCGAAAGTTGGG ATAGCATTTCTTATATCAATAGGCCACTTGAGATCCAGAGAGAAGAAGGTAAATGCTTCACCTTACACGATGCAATTAAAGCCCTCCTGCCAGAACTTTT CGGCAGGAAATCATCGCTGAACGAAGAAAAACGTACCGAAGCTGAAGAAAACATTGTCCCAGAAGAAGATGCTGATAGCAATCGAATGGCTGGACAAGGA GAAGGAACAGTAATCAAGCCATTGGAGACTGTGAGTGCAGCGGCCAATGCTGAAATCAAGCTCATACGAATTCAAGGTATCGAACCGAAACTGGAAGTAC CATTTTCTTGGGTTGCAAACCACTTAAAGCATCCTGAACAGTTTCTTCACGTCTGCGTGTATATCAGAATTCCTCCCACAAATTCCGTGTAA
AA sequence Show only first row Show all	>Lus10020737 pacid=23140877 polypeptide=Lus10020737 locus=Lus10020737.g ID=Lus10020737.BGIv1.0 annot-version=v1.0 MEEAQKYVWMGAIPLQIHLHESEVTTVPPPPPALILAPRIGYLPLLLHLIKPHFSSTLPPGFDTVWFEYKGLPLKWYIPTGVLFDLLCAEPERPWNLTIH FRGYPSHLLIPCDGEDSVKWNFINSLKEADYIINGNCKNVMHMSQSDQMDLWNSVVNANMEAFIRSTSKLKIGTIEDEFAAKASLSSQKSQKMTGEVDPV AQTKPGKVPVRLYIWSVSKDFEDLEDAPPIESWDSISYINRPLEIQREEGKCFTLHDAIKALLPELFGRKSSLNEEKRTEAEENIVPEEDADSNRMAGQG EGTVIKPLETVSAAANAEIKLIRIQGIEPKLEVPFSWVANHLKHPEQFLHVCVYIRIPPTNSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17290		ATG5, APG5, ATA...	AUTOPHAGY 5, autophagy protein...		Lus10020737 [exp]	0	1
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10037621 [exp]	6.8	0.9017
AT4G07390			Mannose-P-dolichol utilization...		Lus10017025 [exp]	9.0	0.8751
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Lus10014992 [exp]	10.6	0.8322
AT2G21120			Protein of unknown function (D...		Lus10012716 [exp]	11.2	0.8853
AT3G02740			Eukaryotic aspartyl protease f...		Lus10036430 [exp]	13.4	0.8440
AT2G26040		RCAR14, PYL2	regulatory components of ABA r...		Lus10026430 [exp]	16.4	0.8615
AT3G08790			ENTH/VHS/GAT family protein (....		Lus10011689 [exp]	17.0	0.8743
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10040468 [exp]	17.7	0.8681
AT4G07390			Mannose-P-dolichol utilization...		Lus10021350 [exp]	19.3	0.8439
AT3G15920			Phox (PX) domain-containing pr...		Lus10023125 [exp]	21.4	0.8546

Compare expression of checked genes

Lus10020737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.