Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13940 319 / 2e-105 DNA binding;DNA-directed RNA polymerases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029818 [exp] 811 / 0 AT3G13940 327 / 4e-108 DNA binding;DNA-directed RNA polymerases (.1) Lus10007389 [exp] 132 / 8e-38 AT3G13940 56 / 8e-11 DNA binding;DNA-directed RNA polymerases (.1) Lus10027606 [exp] 93 / 1e-22 ND 38 / 6e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G198600 [exp] 404 / 1e-138 AT3G13940 328 / 4e-108 DNA binding;DNA-directed RNA polymerases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0662 [flax] [poplar] Triple_barrel PF06870 [flax] [poplar] RNA_pol_I_A49 A49-like RNA polymerase I associated factor
Representative CDS sequence Show only first row Show all	>Lus10020738 pacid=23140941 polypeptide=Lus10020738 locus=Lus10020738.g ID=Lus10020738.BGIv1.0 annot-version=v1.0 ATGAACGTTAAGGTCGAGCTGATTCACGACCGGTCTGATCGGACGTTGCCGGTGGTAGGCTACTTCCCGACTGGCTACAATCCTCAGAATGAAGACGTCG ACGATGGCGAGCAATCCGCGCCTCCTACGATGAATCTGTACAAGAATAACGTCCAGAGGGTGAGGATTGATACAGCAGGATCTGCAGCAAAGAGTTCGAT TCGGAGAGGCCCCGAGAAGCTGGAGCTGGTGGTGACTCCAGAAGGATCGAAGCTTGATTTCGTCGGTACAAGTTATAGAGGCGAAGCAAGTAACGCTCAG CTGGCTACTTATGCACTTGGAGTTCTCGATAAGGACACCAATACTTTGAAGATTATGCCAATCGCTGGTAACAAGATATTCCGAATGGAACCGGTTCTTC GAGTGCGTGCCAACTCAGCTAATGAGGACGCTAAAGAAGATGCTGAGCTTTCTGCAAAACAGCAGTCGGCGAAGAAGAGACGACTTCTTGATCAGTATTC AACCAAGAAGTCTGTAGCACGGGACAAGAAGATGTTTAATCTGGCCGAGGGGTTCGATCTGGAATCTCAGCCTGATTTGGGAAATAAAATAAGCAGTATC CAAGTAAACCAGGAAGCTCTAACTAGCAATGATGGTTTCGATGTTGCTCGAAACATCCCACCGCATAATGCTTCTGCCACAGTGCCTAAGGAAGCCTATC CATTGGATAGGATTATTGCCAACAATGATTGGGAGGTTCTTAAGGATATAGATAGGATTCTGGAAGCTGGTGGTTGTCCTGTATTCGTACGCAATAGGAT CCATAAGCTGCGGGATGTTCAGGATGACTTCGATAGGGATACTCTGGCTGGCATTCTTTGTTATATAACGCATCTTGTCAAGTTCAAGGCCTTGCAGTAC ATGGATACTGCAGCAGCTGCGAGAAATCACAGATTCCCGCACTACTTTAAGGATAAGTTTCGGGAGATGTTCAATCCGGAGGGGGAGTCTAGAAGAATGC CGAGTGATAAACAGAATCTGTTGATCAGCTACGTTCTGGTTCTTTCCTTGCACTTTGACGATTTCAAGACAGACCCTGCTGATATAGCTATGGACCTGGG AAAGAGCGTAGTAGACTTGAGACAACATTATGAGTACTTGGGATGCAAGTTTGTGAGTGATGAAAACAAGGTTCGGGTGGCAACCCTCCCGGTCCCTATC CGATTTCCAGAACCAAGGCGGAAACGAAACCGAAGTCAGCGTTAG
AA sequence Show only first row Show all	>Lus10020738 pacid=23140941 polypeptide=Lus10020738 locus=Lus10020738.g ID=Lus10020738.BGIv1.0 annot-version=v1.0 MNVKVELIHDRSDRTLPVVGYFPTGYNPQNEDVDDGEQSAPPTMNLYKNNVQRVRIDTAGSAAKSSIRRGPEKLELVVTPEGSKLDFVGTSYRGEASNAQ LATYALGVLDKDTNTLKIMPIAGNKIFRMEPVLRVRANSANEDAKEDAELSAKQQSAKKRRLLDQYSTKKSVARDKKMFNLAEGFDLESQPDLGNKISSI QVNQEALTSNDGFDVARNIPPHNASATVPKEAYPLDRIIANNDWEVLKDIDRILEAGGCPVFVRNRIHKLRDVQDDFDRDTLAGILCYITHLVKFKALQY MDTAAAARNHRFPHYFKDKFREMFNPEGESRRMPSDKQNLLISYVLVLSLHFDDFKTDPADIAMDLGKSVVDLRQHYEYLGCKFVSDENKVRVATLPVPI RFPEPRRKRNRSQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13940			DNA binding;DNA-directed RNA p...		Lus10020738 [exp]	0	1
AT1G31220			Formyl transferase (.1)		Lus10013428 [exp]	3.2	0.9037
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10037620 [exp]	3.5	0.9161
AT1G80930			MIF4G domain-containing protei...		Lus10003392 [exp]	4.2	0.8888
AT1G26880			Ribosomal protein L34e superfa...		Lus10037177 [exp]	6.2	0.9189
AT3G16310			mitotic phosphoprotein N' end ...		Lus10037573 [exp]	6.9	0.8623
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10004946 [exp]	7.5	0.8937
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10042891 [exp]	8.7	0.9063
AT5G15200			Ribosomal protein S4 (.1.2)		Lus10030487 [exp]	9.2	0.9039
AT1G09810		ECT11	evolutionarily conserved C-ter...		Lus10037365 [exp]	9.9	0.9033
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Lus10001440 [exp]	10.2	0.8949

Compare expression of checked genes

Lus10020738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.