Plant FIBer expression Database

Lus10020739 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G30880 528 / 0 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029819
[exp]
820 / 0 AT2G30880 607 / 0.0 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2)
Lus10027607
[exp]
64 / 5e-13 AT2G30880 63 / 2e-13 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G057300
[exp]
632 / 0 AT2G30880 573 / 0.0 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2)
Potri.005G205300
[exp]
617 / 0 AT2G30880 556 / 0.0 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2)
Potri.003G001400
[exp]
45 / 0.0002 AT1G10290 1253 / 0.0 DYNAMIN-RELATED PROTEIN 2A, dynamin-like protein 6 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0266 PH PF00169 PH PH domain
Representative CDS sequence
>Lus10020739 pacid=23140925 polypeptide=Lus10020739 locus=Lus10020739.g ID=Lus10020739.BGIv1.0 annot-version=v1.0
ATGGCGCTTCTCCGGTCAGTCCTCGTCGATCTCCTTCCCTTCATATCCTTTTTGTTTTCGGAAATTCGTTCATTTCGATGTAACTGGACGGGTTGTAGGC
TTGGTCTCCATCTAAGTCGGCCACTCCGACGGAGACTGCATAGGGCAGTTGAGCCTGAGAACAGTTTGGAGAAGATCAAGCGGCAGCTGGCGTCTGGTTC
CGGCAGAAATTTGCTGCAAGGCCCACTCCTTAAGCGATCCGAGACTCTGAGAAAATGGAATGAGCGCTGGGTGATTTTGGATCCTACAACTGGGAAAATG
GATTACAAGACTAGAAGAAATGAAACAGCTGTCAAGGGGTCTATTTTCTTCGACGCCAATAGCACAATTACCATTTCCCCCGTTAACTTCCAGGGGCTTC
CAAAGTATGATGGTTGCTGTTTCTATATTGGCACGCCACAGAGAAAAGACTACTTCCTTTGCGCGGAGACTCCTGGCGCTGCTAGAGCTTGGGTGACAAC
ATTACAGGCATCTCAGTTGGTCCTCAAAGCCCATAAAGAAGCTGTAAATTCCTTGAGTGGAAATGGGTCTGCAAAGTTGGGTACAGTTGCCACAGTAGTT
GCTGCTGCCAATTCTACTGCATTAGAATGCTCTAAAGAGATTGAAGCAGCAATGCAGATCTCATTGAGAAACGCTCTTGGAACTGTTGTCAATAAGGCAC
TTGATGAACCAATGGATGACCTGACAATTATGAAGGAGACGCTGAGAGTCAAGGATGAAGAATTGCAGAATCTGGCTAGAGATGTTCGTGCCCGTGATTC
AACAATAAGGGCCATTGCTGAGAAACTTACAGAGACTGCCGACGCTGCAGAGGCTGCCGCATCTGCAGCTCACACAATGGATGAACAGAGAAGAAAGGCA
TGCAATGAGGTTGAACGCATTTCAAAAGCCTCGCAAAGGCAGTTTGAATCATCCAAGTTGAAGCTGAAAGAATATGAAGAGAAAGTCGGGTCCCTAAGCA
ACGAGAGGGGTGAATTGATCAAGCAAAGAGACTCAGCTCTGCAAGAAGCACATTTATGGCGAACCGAGCTTGCAAAAGCTAGAGAGCGTGCAGTTATATT
AGAGGGGGCGGTGGTACGAGCAGAGGAGAAGGTGAGAGTTGCAGAGGCAGATGCTGAAGCTAGAGTCAAAGAAGCTACAGATCATGAGCACGCTGCTCTA
CAGGAGAAGCAAGAGCTTCTAGCGTATGTCAACGTATTGCAGGAAAAACTCCAAAGACAGCAAATAGATAAGAAGCAAGTTTTTGAGGAGAAAACTGAGT
CGTCAGATCCAAGCTCCCACGATCTCCCGCAGACTAAAGACGTGGACTTGCCCGATGAAAATGCTGACAAAGCTTGTCTAAGCGATTCCAGATCCGTCCC
CGATTCCGGAGAGAACGTAGTGACAGTGGACCAGGCCAACCTCCGGACAATTACAGACACCCAGTGGAGCGATATTCAAGCAACCGAGTCGAGGGTAGCC
GACGTAAGAGAGATTCCAGCCGAGAGCGAAAGAAGCAGCAGCAGCCACGATATTGTAGTTGTCAGCACACCTGAAACAGCGAGTAATCATCATGATCAAG
GGACTAACAGTTTCGATCAGCCTTGA
AA sequence
>Lus10020739 pacid=23140925 polypeptide=Lus10020739 locus=Lus10020739.g ID=Lus10020739.BGIv1.0 annot-version=v1.0
MALLRSVLVDLLPFISFLFSEIRSFRCNWTGCRLGLHLSRPLRRRLHRAVEPENSLEKIKRQLASGSGRNLLQGPLLKRSETLRKWNERWVILDPTTGKM
DYKTRRNETAVKGSIFFDANSTITISPVNFQGLPKYDGCCFYIGTPQRKDYFLCAETPGAARAWVTTLQASQLVLKAHKEAVNSLSGNGSAKLGTVATVV
AAANSTALECSKEIEAAMQISLRNALGTVVNKALDEPMDDLTIMKETLRVKDEELQNLARDVRARDSTIRAIAEKLTETADAAEAAASAAHTMDEQRRKA
CNEVERISKASQRQFESSKLKLKEYEEKVGSLSNERGELIKQRDSALQEAHLWRTELAKARERAVILEGAVVRAEEKVRVAEADAEARVKEATDHEHAAL
QEKQELLAYVNVLQEKLQRQQIDKKQVFEEKTESSDPSSHDLPQTKDVDLPDENADKACLSDSRSVPDSGENVVTVDQANLRTITDTQWSDIQATESRVA
DVREIPAESERSSSSHDIVVVSTPETASNHHDQGTNSFDQP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G30880 Pleckstrin homology (PH) domai... Lus10020739
[exp]
0 1
AT1G48790 AMSH1 associated molecule with the S... Lus10009006
[exp]
1.4 0.9628
AT1G48790 AMSH1 associated molecule with the S... Lus10009634
[exp]
4.2 0.9321
AT4G35580 NAC NTL9, CBNAC NAC transcription factor-like ... Lus10008285
[exp]
5.5 0.9348
AT3G54440 glycoside hydrolase family 2 p... Lus10024155
[exp]
5.5 0.9317
AT1G15740 Leucine-rich repeat family pro... Lus10008036
[exp]
8.1 0.9442
AT4G28220 NDB1 NAD(P)H dehydrogenase B1 (.1) Lus10018541
[exp]
10.2 0.9289
AT2G44140 Peptidase family C54 protein (... Lus10027079
[exp]
11.0 0.9387
AT3G19420 PTEN2A, ATPEN2 phosphatase and TENsin homolog... Lus10002826
[exp]
13.4 0.9257
AT2G03340 WRKY WRKY3 WRKY DNA-binding protein 3 (.1... Lus10015377
[exp]
14.1 0.9180
AT5G46410 SSP4 SCP1-like small phosphatase 4 ... Lus10004551
[exp]
15.0 0.9225

Lus10020739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.