Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06570 645 / 0 HPPD, HPD, PDS1 4-hydroxyphenylpyruvate dioxygenase, phytoene desaturation 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029820 [exp] 668 / 0 AT1G06570 520 / 0.0 4-hydroxyphenylpyruvate dioxygenase, phytoene desaturation 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G057400 [exp] 716 / 0 AT1G06570 646 / 0.0 4-hydroxyphenylpyruvate dioxygenase, phytoene desaturation 1 (.1.2) Potri.005G205200 [exp] 478 / 1e-168 AT1G06570 435 / 9e-152 4-hydroxyphenylpyruvate dioxygenase, phytoene desaturation 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0104 [flax] [poplar] Glyoxalase PF00903 [flax] [poplar] Glyoxalase Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10020740 pacid=23140823 polypeptide=Lus10020740 locus=Lus10020740.g ID=Lus10020740.BGIv1.0 annot-version=v1.0 ATGGCCAAGCCAGCTACCCCACCCTCCGCCGATGCTACTTCACCGTCCTTCAAGTTAGTCGGATTCTCCAAATTCGTCCGCCACAACCCCCGCTCCGACC GCTTCAAGGTCAAGCGCTTCCACCACATCGAGTTCTGGTCTACCGATTCCACCAACACCGCTCGCCGCTTCTCCTGGGGGCTCGGCATGCCGATCGTCGC CAAATCAGACCTCTCCACTGGAAACGTCACCCACGCTTCTTACCTCATCCGCTCGGGAGACCTCTGCTTCCTCTTCACTTCTCCTTACTCTCCTTCAATC GCCGAGGCCGAGAGCCTCTCCCACACCGCTACAGCTTCTTTGCCGACCTTCGATCACGACGCCTCCCGCCGATTCTCCGCCAAGCACGGCCTCGCTGTCC GTGCTGGATCGATCGAAGTCGAGGACGCTGAGCTGGCGTTCCGTGCAAGCGTCGCTCACGGAGCTAGACCGTCTGCTGAGCCTGCAGTTCTCGACGGTCG TGCTGTAGTTGCTGAGGTGGAACTCTACGGCGACGTCGTTTTGCGGTACGTGAGTTACACGAACCCTATCCATTCAACCAATTCAGGTCCGGATTCATGG TTTCTCCCCAAATTCGAGGCAGTAGACGAAGCATCTGCGTTCCCTCTGGACTACGGGATCCGACGATTGGACCACGCCGTGGGGAATGTGCCGGAATTGG GACCGGCGGTGGCGTATGTTAAAGAGTTCACCGGTTTTCACGAGTTTGCTGAGTTCACAGCGGCGGATGTGGGGACGAGTGAGAGCGGATTGAACTCGGC GGTGTTGGCTAACAACGAGGAGATGGTGCTGCTGCCGATGAACGAGCCTGTGTATGGAACGAAGAGGAAGAGCCAAATACAAACGTATTTGGAGCACAAC GAAGGAGCCGGGGTGCAGCATTTGGCTCTGATGTCTGAAGATATCTTCAGGACGTTGAGAGAGATGAGGAGCAGAAGCGGCATTGGTGGATTTGAGTTCA TGCCATCTCCGCCGCCTAGCTACTACAAGAACTTGAAGAACAGAGCAGGGGATGTGCTGAGCGACGAGCAGATTAAGCAGTGCGAGGAGTTGGGGATATT GGTGGATAAAGATGATCAAGGCACTCTGCTTCAGATCTTCACCAAACCTGTTGGTGACAGACCGACCATCTTTATCGAGATAATCCAACGAGTAGGGTGC ATGATGAAGGACGATGCAGGGAAAGATTACCAGAAAGGTGGCTGCGGTGGATTCGGGAAGGGCAACTTCTCGGAGCTCTTCAAATCCATCGAGGAGTACG AGAAGACCCTCGAGGCAAAACGACCTGCAGAAGGCACAGGTTCAGCTTAG
AA sequence Show only first row Show all	>Lus10020740 pacid=23140823 polypeptide=Lus10020740 locus=Lus10020740.g ID=Lus10020740.BGIv1.0 annot-version=v1.0 MAKPATPPSADATSPSFKLVGFSKFVRHNPRSDRFKVKRFHHIEFWSTDSTNTARRFSWGLGMPIVAKSDLSTGNVTHASYLIRSGDLCFLFTSPYSPSI AEAESLSHTATASLPTFDHDASRRFSAKHGLAVRAGSIEVEDAELAFRASVAHGARPSAEPAVLDGRAVVAEVELYGDVVLRYVSYTNPIHSTNSGPDSW FLPKFEAVDEASAFPLDYGIRRLDHAVGNVPELGPAVAYVKEFTGFHEFAEFTAADVGTSESGLNSAVLANNEEMVLLPMNEPVYGTKRKSQIQTYLEHN EGAGVQHLALMSEDIFRTLREMRSRSGIGGFEFMPSPPPSYYKNLKNRAGDVLSDEQIKQCEELGILVDKDDQGTLLQIFTKPVGDRPTIFIEIIQRVGC MMKDDAGKDYQKGGCGGFGKGNFSELFKSIEEYEKTLEAKRPAEGTGSA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Lus10020740 [exp]	0	1
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10003149 [exp]	1.4	0.9562
AT1G23440			Peptidase C15, pyroglutamyl pe...		Lus10013026 [exp]	5.3	0.9515
AT5G43430		ETFBETA	electron transfer flavoprotein...		Lus10021198 [exp]	5.5	0.9419
AT2G23060			Acyl-CoA N-acyltransferases (N...		Lus10026088 [exp]	6.0	0.9289
AT5G67250		VFB4, SKIP2	VIER F-BOX PROTEINE 4, SKP1/AS...		Lus10019319 [exp]	6.5	0.9315
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Lus10013155 [exp]	6.7	0.9453
AT2G20630		PIA1	PP2C induced by AVRRPM1 (.1.2)		Lus10032673 [exp]	7.5	0.9402
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031660 [exp]	7.7	0.9444
AT2G30140			UDP-Glycosyltransferase superf...		Lus10026394 [exp]	9.8	0.9395
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10036486 [exp]	9.9	0.9383

Compare expression of checked genes

Lus10020740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.