Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06010 233 / 6e-79 ORG4 OBP3-responsive gene 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029795 [exp] 276 / 3e-96 AT2G06010 218 / 4e-73 OBP3-responsive gene 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G065800 [exp] 243 / 3e-83 AT2G06010 299 / 4e-105 OBP3-responsive gene 4 (.1) Potri.006G142000 [exp] 232 / 3e-78 AT2G06010 288 / 4e-100 OBP3-responsive gene 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020742 pacid=23140955 polypeptide=Lus10020742 locus=Lus10020742.g ID=Lus10020742.BGIv1.0 annot-version=v1.0 ATGGAGCCGCCTCCTCAGCACAACCAGGAAGAACCGGCCTCCTGGGATGATGTTTGCAGTATCAATTTGTTACCTTCAGAATTGGTTTTCAAGTTCAGAA AGGAAATTGAAGGGATTCGAATTGGTGTCAATCTCGAGTTCTACAACGCTCCGGTGAATGATGTTCAGACGAAGCTCGTTCTGAAGCCATTGTCATCAGA ACGGAACTGGAAGTTCATATGCGAGCCTATACGCCAAGAAGTGCGCGTTCAGTCCAAAAAGATTCCCTTGACCCGATTTCTGAACGTACAGGTTGGCATA GGGCATAGTTTCAAGCTGAATGCACTTTCCTGGCAGTGGAAACTCAACACTTGCATGGGCGGTGAGGGTATATCTCGAATACGGAACAAGACAACCCTCG GTTGTTGCCCCGGTCTAGATTTTAGGGCTTTGGCGAAAGACGAGCCGTTGTTCAACATGAAGACTGGACGACTGGATGCCTCGTTGGATAGGATCGAGAC CATCATAACTCAGACATCGTGA
AA sequence Show only first row Show all	>Lus10020742 pacid=23140955 polypeptide=Lus10020742 locus=Lus10020742.g ID=Lus10020742.BGIv1.0 annot-version=v1.0 MEPPPQHNQEEPASWDDVCSINLLPSELVFKFRKEIEGIRIGVNLEFYNAPVNDVQTKLVLKPLSSERNWKFICEPIRQEVRVQSKKIPLTRFLNVQVGI GHSFKLNALSWQWKLNTCMGGEGISRIRNKTTLGCCPGLDFRALAKDEPLFNMKTGRLDASLDRIETIITQTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G06010		ORG4	OBP3-responsive gene 4 (.1)		Lus10020742 [exp]	0	1
AT2G46090			Diacylglycerol kinase family p...		Lus10007917 [exp]	4.4	0.7378
AT1G20770			unknown protein		Lus10030736 [exp]	13.6	0.7277
AT1G50000			methyltransferases (.1.2)		Lus10035666 [exp]	16.0	0.7130
AT5G36260			Eukaryotic aspartyl protease f...		Lus10020201 [exp]	17.3	0.6892
AT2G35130			Tetratricopeptide repeat (TPR)...		Lus10018318 [exp]	33.2	0.6722
AT4G27090			Ribosomal protein L14 (.1)		Lus10003627 [exp]	33.9	0.6786
AT5G59240			Ribosomal protein S8e family p...		Lus10016587 [exp]	43.4	0.6957
AT3G10530			Transducin/WD40 repeat-like su...		Lus10035740 [exp]	43.8	0.6964
					Lus10000588 [exp]	44.0	0.6504
AT1G31220			Formyl transferase (.1)		Lus10040974 [exp]	45.8	0.6928

Compare expression of checked genes

Lus10020742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.