Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04840 757 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 471 / 3e-157 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G06540 462 / 2e-155 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G48910 461 / 2e-154 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 458 / 1e-153 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 459 / 3e-153 MEF22 mitochondrial editing factor 22 (.1) AT4G37380 454 / 7e-152 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G08820 449 / 3e-149 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74630 442 / 2e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62890 434 / 6e-145 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029793 [exp] 1310 / 0 AT1G04840 756 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 500 / 3e-169 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029344 [exp] 484 / 6e-164 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024971 [exp] 476 / 2e-160 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 472 / 1e-158 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 464 / 6e-156 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 464 / 1e-154 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 454 / 2e-151 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023592 [exp] 448 / 3e-149 AT1G74630 840 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G316500 [exp] 919 / 0 AT1G04840 728 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 517 / 5e-176 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 508 / 2e-172 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G035900 [exp] 504 / 2e-171 AT1G74630 884 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 487 / 4e-165 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 487 / 2e-164 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G239600 [exp] 480 / 4e-162 AT5G59200 694 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 482 / 2e-161 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 476 / 5e-159 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G050200 [exp] 464 / 5e-156 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10020743 pacid=23140902 polypeptide=Lus10020743 locus=Lus10020743.g ID=Lus10020743.BGIv1.0 annot-version=v1.0 ATGAAATCTCTTTTTGCTCTATTCAAACAAACACCCATTGTTCCCGCCAAACAGATTTTTCCTTCCACCCCTACTCATTTATCCTCTTATCCAATCCCAA CTGAAGCCTACTTCGTATCTCTAATCCATGATTCTACAACCGTCCTCCGTCTCCACCAAATCCATGCCCAGATCTTCCGCCAGGGTTTCTCCAAGAGCAG CCATCTGGCCACCCAGATGGTATCTTCTTCGTCTTTGCACAAAGCCATTGACTATGCCATCTCCATATTCTGCCAATACCATCCCAAGAACGTGTTCTTG TTCAATGCCCTCATACGTGGTCTCGAGAGGAATGCCCGGTTCGAGACGGCATTGTCCCATTTTGTTCTCATGTTGAAGTCGGATATTAGGCCTGACAGGA TGACCTACCCCTTTGTTCTCAAATCAGCCGCACACTTGTTCTTCACAAGGCTTGCTTCGGAGCTACACTGTATGATCTTGAAGTGTGGGGCTCAGTTTGA TTCCTTCGTTGGTGTATCTCTTGTCGATATGTATGTGAAAGTTGAAGAACTAGAGTCATCACTAAAGGTGTTCGATGAAAGTCCTCAGAGATTTGATTCT GGGGGCATGTTGCTGTGGAACGTAGTGATCAATGGTTGTTGTAAGATTGGGCGTATGGGTAAGGCCATGGAGCTTTTCAATACTATGCCAGGGAGGGATA CTGGGTCATGGAACAGTTTGATTAATGGGTTTTTGAGAGCAGGGGAAGTGGATAAAGCCAATGCACTTTTTTGTCAGATGCCGGAAAAAAATGTAGTATC TTGGACCACAATGGTTAATGGGTTTTCTCAGAATGGAGACAATGAAAAGGCGCTATCAGTTTTCTCAAGGATGTTGGAGGAGGATGTGAGACCAAATGAT TACACTGTTGTTTCTGCACTTTCCGCTTGTGCAAAGATTGGGGCACTTGAAGGTGGATTGAGGATACACAAGTATATTACAAATAACTTGTTCAAGTTGA ATGCAACAATTGGGACTGCTTTGGTAGACATGTATGCGAAATGCGGTGATATAGATTCCGCAAGTCAGGTCTTCAACAATACAAAGGAGAGGGACATACT TACATGGAGTGTTATGATATGGGGATGGGCACTCCATGGACGTTTCGAGCAAGCTGCTCTATGCTTCAAGCAGCTGATGCGTTCAGGTATAAAGCCGGAT GAAGTTGTCTTTCTTGCGATGTTAACTGCTTGTGTGCATGCAGGCAAAGTTGATCTTGGGCTTAATTTCTTCAACAGCATGAGGCTTGACTACCGTATCG AACCCTCCATGAAACACTATTCTTTAGTTATTGACCTGTTAGGTAGGGCAGGACGGCTGAACGAAGCTCTCAACTTCATCCAGAAAATGCCCATAAATGC AGACCTTGTGATTTGGGGAGCTCTGTTCAGTGCTTGTAGGGCGCACAAAAATGTCGAATTAGCAGAGCTTTCTGCGAAAAAGCTCCTAGAGCTTGAACCA AAACACCCCGGCAGTTACGTATTTTTGTCGAGTGCTTATGCTGCCGTTGGCCGATGGGAAGATTCAGAGAGAGTGAGAACTTTAATGCTGGACAAAGGCA TTGAAAAAGATCCCGGGTGGAGTTACATCGAGTTGGATGGACTGGTTCATAGATTTGTGGCTGGTGATAATGCTCATAAGGATGCAAAAGAAATCAAAGT GAAACTAGAGGAGATAATGTCAGGTGCAAGACGGCAAGGATACACACCTGGAACTGAATGGGTGCTTCATAACATTGAAGAAGAAGAGAAGGAAGATGCA CTTGGAAGTCACAGTGAAAAGTTGGCGCTTGCTTTTGCATTAATCCGAAGTTCACCAAAAGCGACCATTAGGATTGTGAAGAATCTTAGGATCTGTGGTG ATTGCCACTCTTTGATGAAGTACGCTAGCGTTATGAGCCAGAGGGAGATTGTAGTGAGAGATAAGAAACGTTTCCATCATTTCAAAGATGGAACTTGCTC ATGTGGAGATTATTGGTGA
AA sequence Show only first row Show all	>Lus10020743 pacid=23140902 polypeptide=Lus10020743 locus=Lus10020743.g ID=Lus10020743.BGIv1.0 annot-version=v1.0 MKSLFALFKQTPIVPAKQIFPSTPTHLSSYPIPTEAYFVSLIHDSTTVLRLHQIHAQIFRQGFSKSSHLATQMVSSSSLHKAIDYAISIFCQYHPKNVFL FNALIRGLERNARFETALSHFVLMLKSDIRPDRMTYPFVLKSAAHLFFTRLASELHCMILKCGAQFDSFVGVSLVDMYVKVEELESSLKVFDESPQRFDS GGMLLWNVVINGCCKIGRMGKAMELFNTMPGRDTGSWNSLINGFLRAGEVDKANALFCQMPEKNVVSWTTMVNGFSQNGDNEKALSVFSRMLEEDVRPND YTVVSALSACAKIGALEGGLRIHKYITNNLFKLNATIGTALVDMYAKCGDIDSASQVFNNTKERDILTWSVMIWGWALHGRFEQAALCFKQLMRSGIKPD EVVFLAMLTACVHAGKVDLGLNFFNSMRLDYRIEPSMKHYSLVIDLLGRAGRLNEALNFIQKMPINADLVIWGALFSACRAHKNVELAELSAKKLLELEP KHPGSYVFLSSAYAAVGRWEDSERVRTLMLDKGIEKDPGWSYIELDGLVHRFVAGDNAHKDAKEIKVKLEEIMSGARRQGYTPGTEWVLHNIEEEEKEDA LGSHSEKLALAFALIRSSPKATIRIVKNLRICGDCHSLMKYASVMSQREIVVRDKKRFHHFKDGTCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04840			Tetratricopeptide repeat (TPR)...		Lus10020743 [exp]	0	1
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10026919 [exp]	5.2	0.8601
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Lus10018734 [exp]	7.7	0.7860
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10016664 [exp]	11.2	0.8418
AT5G16420			Pentatricopeptide repeat (PPR-...		Lus10030222 [exp]	12.8	0.8302
AT5G64950			Mitochondrial transcription te...		Lus10004329 [exp]	15.2	0.8330
AT5G16860			Tetratricopeptide repeat (TPR)...		Lus10020652 [exp]	16.2	0.7360
AT5G22740		ATCSLA2, ATCSLA...	CELLULOSE SYNTHASE-LIKE A 2, A...		Lus10020539 [exp]	19.3	0.7835
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10001461 [exp]	26.4	0.7945
AT3G14580			Pentatricopeptide repeat (PPR)...		Lus10026191 [exp]	28.6	0.7348
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Lus10040512 [exp]	33.9	0.8176

Compare expression of checked genes

Lus10020743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.