Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44760 390 / 2e-134 Domain of unknown function (DUF3598) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029792 [exp] 553 / 0 AT2G44760 552 / 0.0 Domain of unknown function (DUF3598) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G138600 [exp] 408 / 2e-141 AT2G44760 578 / 0.0 Domain of unknown function (DUF3598) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0116 [flax] [poplar] Calycin PF12204 [flax] [poplar] DUF3598 Domain of unknown function (DUF3598)
Representative CDS sequence Show only first row Show all	>Lus10020744 pacid=23140915 polypeptide=Lus10020744 locus=Lus10020744.g ID=Lus10020744.BGIv1.0 annot-version=v1.0 ATGGAGGTCGAGACTGTTCTCCAGACTCAGGAACCTGTGATTAGGCCTGTGTGGAGTACGTTTGCAAGTAGTTTGAGCGGTATATGGAAAGGGATTGAGG CAGTTTTTTCACCCATTACAGGTGAAATGGACCCCATTGACATTGGGAAGAAAGGAGAGGAGTTGTATGACTGTTATACTCTTTCCCGCATTGAAGCTGT AACATCAGAGCTATCCAAAGGACAGACATCTCGGATCCAGCGGAAGATCAAATGGGCGACATTGAATCCGCACGGTGAAGCATCATCACCGAGCGGTAAT GGAGGTGTAGGAAAGCTGGTGTTGCCCAAATTCGAGTCTTTTGATTTTGAATCAAGTGATGTTATGGAAGAAGATGTAATGGGTGATGAACCAGGTCTTG TTTTCTTCGAGGACGGATCATATTCACGAGGTCCGCTCAACATCCCGTGTCTGGTTAAAGGTTGCCACAAAAGATTGCGCATTGTTCATACCATCGAGTT TAGTCAAGGGGGTGCAGACGTTCAGATACTCAGAGTTGCTGTGTACGAAGAACAGTGGGCGAGTCCAGCAAATCCCAATGACCAAAGCGATATGGAGTTT GACTTGGAGCCATTTTCCCAGCGGAAGCGGACTCGGGCATCAGAGCTTGCAGGATCCTGGAAGGTATTCGAAATAAATGCTACTCCAATTTACGGCCAGG AAGAGGAGATGGCAGACATCAACAATGGCTCGCCGTATGTGTACCTCTGCAACGAGGCATTGAAGAAGAGGAGCTTGCCTGGAAATCCCGTTCACTTCCG CGAAGAAGAGATGGTTGATACCCGGGATGTGACGATGCTTTGGCTCCCAGGTGGAGTAACTGCTTCCGTAGTATCAACAAGGAAGGAGTTCTTTGCATTG GCGTCGGCTGGTACTCGGACCAAGGTGTAA
AA sequence Show only first row Show all	>Lus10020744 pacid=23140915 polypeptide=Lus10020744 locus=Lus10020744.g ID=Lus10020744.BGIv1.0 annot-version=v1.0 MEVETVLQTQEPVIRPVWSTFASSLSGIWKGIEAVFSPITGEMDPIDIGKKGEELYDCYTLSRIEAVTSELSKGQTSRIQRKIKWATLNPHGEASSPSGN GGVGKLVLPKFESFDFESSDVMEEDVMGDEPGLVFFEDGSYSRGPLNIPCLVKGCHKRLRIVHTIEFSQGGADVQILRVAVYEEQWASPANPNDQSDMEF DLEPFSQRKRTRASELAGSWKVFEINATPIYGQEEEMADINNGSPYVYLCNEALKKRSLPGNPVHFREEEMVDTRDVTMLWLPGGVTASVVSTRKEFFAL ASAGTRTKV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44760			Domain of unknown function (DU...		Lus10020744 [exp]	0	1
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10037004 [exp]	5.6	0.7210
AT5G27700			Ribosomal protein S21e (.1)		Lus10010971 [exp]	13.3	0.6994
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029182 [exp]	14.1	0.6875
AT5G66380		ATFOLT1	folate transporter 1 (.1)		Lus10041789 [exp]	15.2	0.6105
AT1G18530			EF hand calcium-binding protei...		Lus10038953 [exp]	16.4	0.6281
AT4G29035			Plant self-incompatibility pro...		Lus10011895 [exp]	17.8	0.6805
AT3G24060			Plant self-incompatibility pro...		Lus10017719 [exp]	20.1	0.6787
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10023022 [exp]	21.9	0.6743
AT5G54010			UDP-Glycosyltransferase superf...		Lus10008453 [exp]	25.9	0.6688
					Lus10036275 [exp]	26.6	0.6671

Compare expression of checked genes

Lus10020744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.