Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02140 247 / 5e-85 MAGO, HAP1, MEE63 MATERNAL EFFECT EMBRYO ARREST 63, HAPLESS 1, mago nashi family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029791 [exp] 276 / 2e-96 AT1G02140 248 / 4e-86 MATERNAL EFFECT EMBRYO ARREST 63, HAPLESS 1, mago nashi family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G049700 [exp] 258 / 4e-89 AT1G02140 280 / 1e-98 MATERNAL EFFECT EMBRYO ARREST 63, HAPLESS 1, mago nashi family protein (.1) Potri.002G138500 [exp] 255 / 6e-88 AT1G02140 281 / 7e-99 MATERNAL EFFECT EMBRYO ARREST 63, HAPLESS 1, mago nashi family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02792 [flax] [poplar] Mago_nashi Mago nashi protein
Representative CDS sequence Show only first row Show all	>Lus10020745 pacid=23140831 polypeptide=Lus10020745 locus=Lus10020745.g ID=Lus10020745.BGIv1.0 annot-version=v1.0 ATGTCGACGGAGGAAGAAGGAGAGTTCTACCTGAGGTATTACGTAGGCCACAAGGGGAAATTTGGCCATGAGTTCCTCGAGTTCGAGTTCAGGCCCGACG GCAAGCTCCGATACGCCAATAACTCCAACTACAAGAACGACACCATGATTCGTAAGGAGGTCTTCCTCTCCCCCGCCGTTCTCAAGGAGTGCCGCCGCAT CATCTCCGACAGCGAGATAATGAAGGAAGACGATAACAACTGGCCGGAGCCAGACAGGGTTGGGCGACAGGAGCTTGAGATTGTGATGGGAAACGAACAC ATTTCCTTCACTACCTCTAAAATTGGATCGCTTGTCGATGTACAGAGCAGTAAGGACCCAGAAGGTCTTCGCATCTTCTATTACCTTGTTCAGTTAGCTA TTACTCTGATGACTGTCGACTGTTCCGGTGAAAAGACTCCAGGGAGCAAGCCTCCATCTTGCTATTCGGGTGAAGATGACAAAGATAATTCTTTGATTGC AGGACTTGAAGTGCTTTGTGTTCTCCCTCATCTCGCTCCACTTCAAGATCAAGCCCATTTAGATGAATGCTGCAGATAG
AA sequence Show only first row Show all	>Lus10020745 pacid=23140831 polypeptide=Lus10020745 locus=Lus10020745.g ID=Lus10020745.BGIv1.0 annot-version=v1.0 MSTEEEGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLSPAVLKECRRIISDSEIMKEDDNNWPEPDRVGRQELEIVMGNEH ISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQLAITLMTVDCSGEKTPGSKPPSCYSGEDDKDNSLIAGLEVLCVLPHLAPLQDQAHLDECCR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02140		MAGO, HAP1, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10020745 [exp]	0	1
AT5G39600			unknown protein		Lus10033166 [exp]	11.2	0.7389
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Lus10018734 [exp]	13.0	0.7446
AT1G61170			unknown protein		Lus10018461 [exp]	15.4	0.7935
AT5G67630			P-loop containing nucleoside t...		Lus10011551 [exp]	23.9	0.7596
AT2G01630			O-Glycosyl hydrolases family 1...		Lus10034607 [exp]	33.7	0.7381
AT4G32605			Mitochondrial glycoprotein fam...		Lus10034136 [exp]	47.5	0.6774
AT5G67630			P-loop containing nucleoside t...		Lus10019267 [exp]	61.8	0.7167
AT5G60050			BTB/POZ domain-containing prot...		Lus10038475 [exp]	69.3	0.6878
AT1G54990		RGR1, AXR4	REDUCED ROOT GRAVITROPISM 1, R...		Lus10004478 [exp]	69.7	0.7012
AT5G17990		PAT1, TRP1	PHOSPHORIBOSYLANTHRANILATE TRA...		Lus10042050 [exp]	89.8	0.6722

Compare expression of checked genes

Lus10020745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.