Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06400 364 / 8e-130 ARA2, AtRABA1a, AtRab11E, Ara-2 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, Ras-related small GTP-binding family protein (.1) AT1G16920 346 / 9e-123 ATRABA4B, RAB11, ATRABA1B RAB GTPase homolog A1B (.1) AT5G45750 345 / 3e-122 AtRABA1c RAB GTPase homolog A1C (.1) AT4G18800 340 / 2e-120 AthSGBP, AtRab11B, AtRABA1d RAB GTPase homolog A1D (.1) AT5G60860 321 / 9e-113 AtRABA1f RAB GTPase homolog A1F (.1) AT3G15060 318 / 1e-111 AtRABA1g RAB GTPase homolog A1G (.1) AT4G18430 313 / 2e-109 AtRABA1e RAB GTPase homolog A1E (.1) AT1G28550 313 / 2e-109 AtRABA1i RAB GTPase homolog A1I (.1) AT2G33870 305 / 3e-106 ArRABA1h RAB GTPase homolog A1H (.1) AT1G09630 296 / 7e-103 ATRAB-A2A, ATRAB11C, ATRABA2A ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029789 [exp] 416 / 5e-150 AT1G06400 373 / 3e-133 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, Ras-related small GTP-binding family protein (.1) Lus10029253 [exp] 339 / 8e-120 AT5G45750 393 / 4e-141 RAB GTPase homolog A1C (.1) Lus10007306 [exp] 335 / 4e-118 AT5G45750 387 / 5e-139 RAB GTPase homolog A1C (.1) Lus10017679 [exp] 326 / 1e-114 AT5G60860 426 / 4e-154 RAB GTPase homolog A1F (.1) Lus10002178 [exp] 326 / 1e-114 AT5G60860 423 / 4e-153 RAB GTPase homolog A1F (.1) Lus10015297 [exp] 317 / 4e-111 AT5G60860 428 / 6e-155 RAB GTPase homolog A1F (.1) Lus10025432 [exp] 314 / 5e-110 AT5G60860 422 / 1e-152 RAB GTPase homolog A1F (.1) Lus10013961 [exp] 312 / 3e-109 AT5G60860 412 / 7e-149 RAB GTPase homolog A1F (.1) Lus10039895 [exp] 297 / 2e-103 AT5G60860 397 / 5e-143 RAB GTPase homolog A1F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G070300 [exp] 357 / 4e-127 AT5G45750 392 / 1e-140 RAB GTPase homolog A1C (.1) Potri.004G061000 [exp] 351 / 1e-124 AT4G18800 392 / 9e-141 RAB GTPase homolog A1D (.1) Potri.001G374000 [exp] 333 / 1e-117 AT5G60860 417 / 1e-150 RAB GTPase homolog A1F (.1) Potri.013G123600 [exp] 321 / 1e-112 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1) Potri.019G092500 [exp] 320 / 3e-112 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1) Potri.011G061300 [exp] 318 / 2e-111 AT5G60860 416 / 5e-150 RAB GTPase homolog A1F (.1) Potri.003G004100 [exp] 296 / 1e-102 AT1G09630 382 / 6e-137 ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) Potri.006G000300 [exp] 291 / 4e-101 AT1G07410 400 / 4e-144 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.016G000400 [exp] 289 / 5e-100 AT1G07410 380 / 4e-136 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.010G197200 [exp] 283 / 6e-98 AT1G07410 370 / 3e-132 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10020746 pacid=23140957 polypeptide=Lus10020746 locus=Lus10020746.g ID=Lus10020746.BGIv1.0 annot-version=v1.0 ATGGCTGGCTACCGACCTGAAGAAGACTACGATTACTTGCTCAAGCTGGTTCTGATCGGCGATTCCGGCGTCGGAAAATCCAACTTGCTCTCCAGGTTCA CCAAGAACGAGTTCAATCTCGAGTCCAAGTCCACCATCGGGGTCGAGTTCGCCACCAAGAGCATGAACCTCGATGGCAAGGTCATCAAGGCTCAGATTTG GGACACCGCTGGCCAAGAAAGGTACCGTGCCATAACAAGCGCATACTACAGAGGAGCAGTCGGTGCTTTACTCGTCTACGACGTGACTCGCCGCTCAACA TTTGAAAACGTGGCGAGGTGGCTGAAAGAGTTGAGGGAGCACACCGACCCCAACATCGTCGTCATGCTCATAGGCAACAAATCAGATCTCAGGCACCTCG TAGCTGTCCAGACCGAAGATGCGAAAGCATATGCTGAGAGGGAGTCCATGTACTTCATGGAGACATCAGCTCTCACCGCAACAAACGTGGAGAGCGCCTT CACCGAAGTCATGACGCAGATATACAAGATCGTGAGCAAGCGGACTGTAGATGGAACCAATGACGGCACAACAGGTGTCCCTCTAAAGGGAGAGACCATC AACGTTAAGCAGGAAGGTTCTGTTCTCAAGAGAATGGGGTGCTGTTCTTAG
AA sequence Show only first row Show all	>Lus10020746 pacid=23140957 polypeptide=Lus10020746 locus=Lus10020746.g ID=Lus10020746.BGIv1.0 annot-version=v1.0 MAGYRPEEDYDYLLKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSMNLDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRST FENVARWLKELREHTDPNIVVMLIGNKSDLRHLVAVQTEDAKAYAERESMYFMETSALTATNVESAFTEVMTQIYKIVSKRTVDGTNDGTTGVPLKGETI NVKQEGSVLKRMGCCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06400		ARA2, AtRABA1a,...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10020746 [exp]	0	1
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10019259 [exp]	7.5	0.8520
AT3G52560		MMZ4 ,UEV1D ,UE...	MMS2 ZWEI HOMOLOGUE 4, ubiquit...		Lus10029415 [exp]	7.7	0.8139
AT5G66170		STR18	sulfurtransferase 18 (.1.2.3)		Lus10028441 [exp]	13.0	0.8072
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Lus10036297 [exp]	13.2	0.8107
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10014942 [exp]	14.6	0.8198
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Lus10033184 [exp]	14.8	0.8175
AT2G04410			RPM1-interacting protein 4 (RI...		Lus10016623 [exp]	18.8	0.7949
AT2G25280			unknown protein		Lus10001925 [exp]	25.8	0.8022
AT1G11740			ankyrin repeat family protein ...		Lus10020036 [exp]	28.2	0.8189
AT2G28605			Photosystem II reaction center...		Lus10038658 [exp]	30.0	0.7895

Compare expression of checked genes

Lus10020746 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.