Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59110 640 / 0 Protein kinase superfamily protein (.1) AT2G42960 630 / 0 Protein kinase superfamily protein (.1) AT1G56720 532 / 0 Protein kinase superfamily protein (.1.2.3) AT1G09440 499 / 2e-174 Protein kinase superfamily protein (.1) AT5G18500 496 / 9e-173 Protein kinase superfamily protein (.1.2) AT3G17420 466 / 2e-161 GPK1 glyoxysomal protein kinase 1 (.1) AT4G01330 442 / 7e-152 Protein kinase superfamily protein (.1.2) AT1G01540 439 / 1e-150 Protein kinase superfamily protein (.1.2) AT4G02630 407 / 5e-138 Protein kinase superfamily protein (.1) AT4G34500 397 / 6e-135 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029788 [exp] 866 / 0 AT3G59110 734 / 0.0 Protein kinase superfamily protein (.1) Lus10001423 [exp] 736 / 0 AT3G59110 763 / 0.0 Protein kinase superfamily protein (.1) Lus10001055 [exp] 734 / 0 AT3G59110 766 / 0.0 Protein kinase superfamily protein (.1) Lus10006215 [exp] 523 / 0 AT1G56720 599 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10036863 [exp] 456 / 3e-157 AT1G56720 580 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10018722 [exp] 444 / 5e-152 AT4G02630 642 / 0.0 Protein kinase superfamily protein (.1) Lus10024813 [exp] 443 / 9e-152 AT4G02630 632 / 0.0 Protein kinase superfamily protein (.1) Lus10041593 [exp] 441 / 1e-150 AT4G01330 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10007919 [exp] 415 / 3e-141 AT1G01540 751 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G203300 [exp] 701 / 0 AT3G59110 686 / 0.0 Protein kinase superfamily protein (.1) Potri.002G059000 [exp] 699 / 0 AT3G59110 704 / 0.0 Protein kinase superfamily protein (.1) Potri.005G003300 [exp] 603 / 0 AT1G56720 712 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G003700 [exp] 584 / 0 AT1G56720 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G001600 [exp] 538 / 0 AT5G18500 635 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G214200 [exp] 536 / 0 AT5G18500 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G026100 [exp] 448 / 1e-153 AT4G02630 608 / 0.0 Protein kinase superfamily protein (.1) Potri.014G088800 [exp] 430 / 4e-147 AT1G01540 687 / 0.0 Protein kinase superfamily protein (.1.2) Potri.009G115600 [exp] 398 / 2e-134 AT4G34500 553 / 0.0 Protein kinase superfamily protein (.1) Potri.004G154000 [exp] 393 / 1e-132 AT4G34500 564 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10020747 pacid=23140874 polypeptide=Lus10020747 locus=Lus10020747.g ID=Lus10020747.BGIv1.0 annot-version=v1.0 ATGAGTTTAAACGCCGAGTTAACGAAGAAGACATCATTTCTTGGCTTGAAGCTGTACGTTCTAATTGGGATATCAGTAGGTGCATTCATAGTTTTGATTC TTTGCATCCTGTCAGTATGGTCTTTTCGTCGAAGATCCAGGAGATCAATGGACAGTATCTCTCAGATTCCGAATGTTTCGAAGGATATAAGGGTCGACAG GGTTGGAACACAGACGTACAATAACCAGCAGGAAAGCTTGTTCCTCACTATTAATGATAAATCAAGCGACAAGAATTCAGGGAAGTTGATTAGCAACAAC TTGAGGATGAGCAAGTCGAGCGATCCTGACAATGTCAGTCAATGCAGCTCGGTTTATCATAATGAGAAAGGATTCAGCTCCCAGTCCGGTGAAGAAGGAG GAAGCTCCGGAGCTATGACGAAGCATCAGCAGCAATCCTCGTATGTGACTGCCTCCCCGTTGATTGGCTTACCGGAATTTTCGCACTTGGGATGGGGTCA TTGGTTTACTCTTAGGGATCTTGAGTTTGCGACGAATCGTTTTGCAGAAGAGAATGTGATTGGTGTGGGTGGATATGGCGTTGTTTATAAGGGCAAGCTG ATTAATGGAACTGAGGTAGCCGTGAAGAAAATTCTGAACAATGTGGGACAGGCAGAGAAGGAATTTCGAGTTGAAGTGGAAGCCATCGGTCATGTTCGGC ATAAGAATCTTGTCCGGCTTCTTGGATACTGTATGGAAGGGGTTCACAGGATGCTTGTGTACGAATATGTGAACAATGGCAACTTAGAGCAGTGGCTTCA TGGCGAAATGCGCCACCATGGTACCCTCACGTGGGAGGCTCGAATGAAGGTTCTTCTCGGGACTGCTAAGGCGCTTGCTTATTTACACGAGGCAATAGAG CCGAAAGTTGTGCACCGTGACATAAAGTCGAGCAACATCTTGATTGACAGTGAATTTAATTGCAAAGTGTCCGATTTCGGATTAGCAAAGCTTTTAGATT CTGGAGAGAGTCACATTACTACAAGAGTTATGGGTACATTTGGGTATGTAGCACCCGAATATGCGAATACCGGCATGTTGAATGAGAAGAGTGACATTTA CAGCTTCGGAGTCCTGCTTCTAGAAGCAGTCACCGGAAGAGATCCCGTTGATTATGAGAGGCCTGAGAATGAGGTTAACCTTGTGGAGTGGCTTAAGATG ATGGTTGGCACGAAGAGAGCCGATGAAGTTGTGGATCCAAGTCTTGAAGCTAAACCTCCGACTCGTGCTCTAAAGCGAGCTCTCTTGGTTGCATTGCGGT GTGTTGATCCTGATTCAGAGAAGAGACCGAAAATGAGTCAGGTCGTGCGGATGCTAGAAACTGAAGAGTACCCTTACCGCGAGGACCGGAGAAACCGGAA GAGTCGGACAACAAGCATGGAGATCGAATCGATGAAGGAATCAACGGAAATGGAAAGCAAAGTAGCAGAGTCATCAGGAAGTGAGGCAGTATCTGGAAAA TCTAAAGGACAGGAGAATTGA
AA sequence Show only first row Show all	>Lus10020747 pacid=23140874 polypeptide=Lus10020747 locus=Lus10020747.g ID=Lus10020747.BGIv1.0 annot-version=v1.0 MSLNAELTKKTSFLGLKLYVLIGISVGAFIVLILCILSVWSFRRRSRRSMDSISQIPNVSKDIRVDRVGTQTYNNQQESLFLTINDKSSDKNSGKLISNN LRMSKSSDPDNVSQCSSVYHNEKGFSSQSGEEGGSSGAMTKHQQQSSYVTASPLIGLPEFSHLGWGHWFTLRDLEFATNRFAEENVIGVGGYGVVYKGKL INGTEVAVKKILNNVGQAEKEFRVEVEAIGHVRHKNLVRLLGYCMEGVHRMLVYEYVNNGNLEQWLHGEMRHHGTLTWEARMKVLLGTAKALAYLHEAIE PKVVHRDIKSSNILIDSEFNCKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGMLNEKSDIYSFGVLLLEAVTGRDPVDYERPENEVNLVEWLKM MVGTKRADEVVDPSLEAKPPTRALKRALLVALRCVDPDSEKRPKMSQVVRMLETEEYPYREDRRNRKSRTTSMEIESMKESTEMESKVAESSGSEAVSGK SKGQEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59110			Protein kinase superfamily pro...		Lus10020747 [exp]	0	1
AT3G59110			Protein kinase superfamily pro...		Lus10029788 [exp]	1.0	0.9634
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Lus10028278 [exp]	5.8	0.9402
AT5G57830			Protein of unknown function, D...		Lus10022171 [exp]	6.9	0.9350
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Lus10038550 [exp]	14.9	0.9030
AT5G45840			Leucine-rich repeat protein ki...		Lus10031860 [exp]	16.4	0.9312
AT5G57830			Protein of unknown function, D...		Lus10010774 [exp]	17.0	0.9229
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Lus10014807 [exp]	17.7	0.9143
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Lus10006944 [exp]	18.2	0.9330
AT3G59690		IQD13	IQ-domain 13 (.1)		Lus10027059 [exp]	18.4	0.9324
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10003517 [exp]	18.5	0.8875

Compare expression of checked genes

Lus10020747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.