Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28410 73 / 4e-14 F-box/RNI-like superfamily protein (.1) AT5G02700 72 / 1e-13 F-box/RNI-like superfamily protein (.1) AT3G18150 65 / 2e-11 RNI-like superfamily protein (.1) AT4G03220 63 / 9e-11 Protein with RNI-like/FBD-like domains (.1) AT5G18780 63 / 1e-10 F-box/RNI-like superfamily protein (.1.2) AT5G02930 62 / 1e-10 F-box/RNI-like superfamily protein (.1) AT5G02920 60 / 3e-10 F-box/RNI-like superfamily protein (.1) AT1G78760 61 / 6e-10 F-box/RNI-like superfamily protein (.1) AT1G80960 60 / 8e-10 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) AT5G02910 57 / 4e-09 F-box/RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023425 [exp] 233 / 5e-75 AT5G56440 61 / 2e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10022888 [exp] 214 / 2e-67 ND 38 / 0.010 Lus10002239 [exp] 210 / 4e-65 AT1G69630 91 / 5e-20 F-box/RNI-like superfamily protein (.1) Lus10026190 [exp] 193 / 2e-58 AT1G16930 80 / 3e-16 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10024695 [exp] 189 / 4e-57 AT1G69630 83 / 3e-17 F-box/RNI-like superfamily protein (.1) Lus10024696 [exp] 188 / 2e-56 AT5G22720 75 / 1e-14 F-box/RNI-like superfamily protein (.1.2) Lus10042477 [exp] 187 / 4e-56 AT1G16930 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10034161 [exp] 180 / 1e-53 AT1G66310 81 / 8e-17 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10029357 [exp] 180 / 4e-53 AT3G28410 79 / 1e-15 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 140 / 2e-38 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G011200 [exp] 130 / 7e-35 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 115 / 4e-29 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G104200 [exp] 84 / 1e-17 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.015G002001 [exp] 77 / 6e-16 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G104300 [exp] 78 / 7e-16 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 74 / 1e-14 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.013G151200 [exp] 68 / 2e-12 AT4G03220 417 / 1e-141 Protein with RNI-like/FBD-like domains (.1) Potri.001G322900 [exp] 63 / 9e-11 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G024300 [exp] 60 / 9e-10 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10020748 pacid=23140813 polypeptide=Lus10020748 locus=Lus10020748.g ID=Lus10020748.BGIv1.0 annot-version=v1.0 ATGGAGAACAGTCGCCGCCGCCGCAAGGCAAGGAAAACTGGAAGAGAGCAATCGGGAAAAGGAGAGAATGATTCATCTATCGACAGGTTGAGCAATCTTC CGGAGCCACTGATTCATCACATCCTTTCGTTCCTCGATACCGAATTAGCCGTTCAGACCTCAGTGCTTTCCCGACGATGGAAATCCGTCTGGAAACAGCT CCCCATTCTCAGTCTTCGTATGAAACGGACTGAAGATCATTGGAGCTTTAAAAGTTGGGTAATGAAGGTTTTGTCGCTCCGTTATCATTTTAGTCTCAGC AAGGTCGTCTTCAGTGAGCTTGCACATGAATTCCATTTTGTTCCGGAAGATTGGTTGTTGTTTGGGATGTGCAGTCTGAAAATTTTAGAACTAGGCTCTC TTACCTTCGGTAATACATTCCCATGGTCTCATCTCGTGGTGCTGGAAAAACTAGAGTTGTACCGGTGCACGTTCATCGCTGCTCAGGAAGAGGTTATCGT CGACCCTTTTTCTAACCTCCCATGTCTTGAAGTTTTGACCTTGAATACTTGCTTCTTCATTTGTAGTAAGGGCGATACGAGATTCAGGATTTCCGGCCTC CAGCTGCTTAGTGTCCGTCTCGCATACAATGAGTTCCACAAGGTGGAAATATATGCACCAAAACTCGAACACTTCAGATTCAGGTATACTGATCGCCTTG TACAGTTCACAGGGCTGACCCTTCCTTCCCTTTGTCGTGCTGAGATTCGGGATTGTTATGTGGAGGAGGATGGGGATGAATATATAAAGCAACAGTTGAT CCCCTTGTTCCGCGGGTTGAGTAATGCAACATCTCTTGTGTTGTGGTCTCGTGCCGTTCGGATGCTTGGGGGTATCTCTGATTATCTTGAAGATCAACCC TCTCCCTTTACCAGATTGAAGTCTTTGGTTATTTTTGACTCTCGGCTCTCTGGCCATGATGTACCTTATGCAGCGCTCAACTACGTCCTTAAAGGGTCTT CTGAGATGAAACCACGTGTTGAGTTTATAGCATAG
AA sequence Show only first row Show all	>Lus10020748 pacid=23140813 polypeptide=Lus10020748 locus=Lus10020748.g ID=Lus10020748.BGIv1.0 annot-version=v1.0 MENSRRRRKARKTGREQSGKGENDSSIDRLSNLPEPLIHHILSFLDTELAVQTSVLSRRWKSVWKQLPILSLRMKRTEDHWSFKSWVMKVLSLRYHFSLS KVVFSELAHEFHFVPEDWLLFGMCSLKILELGSLTFGNTFPWSHLVVLEKLELYRCTFIAAQEEVIVDPFSNLPCLEVLTLNTCFFICSKGDTRFRISGL QLLSVRLAYNEFHKVEIYAPKLEHFRFRYTDRLVQFTGLTLPSLCRAEIRDCYVEEDGDEYIKQQLIPLFRGLSNATSLVLWSRAVRMLGGISDYLEDQP SPFTRLKSLVIFDSRLSGHDVPYAALNYVLKGSSEMKPRVEFIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28410			F-box/RNI-like superfamily pro...		Lus10020748 [exp]	0	1
AT3G08840			D-alanine--D-alanine ligase fa...		Lus10001259 [exp]	4.0	0.8582
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10007875 [exp]	6.5	0.8471
AT2G46860		ATPPA3	pyrophosphorylase 3 (.1)		Lus10028320 [exp]	9.3	0.7934
AT3G21690			MATE efflux family protein (.1...		Lus10027169 [exp]	23.2	0.8312
AT5G09310			unknown protein		Lus10037415 [exp]	35.9	0.8275
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10027004 [exp]	46.5	0.8208
AT2G30140			UDP-Glycosyltransferase superf...		Lus10026393 [exp]	56.9	0.7825
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10007874 [exp]	57.5	0.7882
AT5G58750			NAD(P)-binding Rossmann-fold s...		Lus10040675 [exp]	60.4	0.8151
AT1G71980			Protease-associated (PA) RING/...		Lus10014823 [exp]	63.5	0.8070

Compare expression of checked genes

Lus10020748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.