Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42750 411 / 3e-144 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G23240 118 / 1e-29 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G48030 69 / 9e-13 GFA2 gametophytic factor 2 (.1) AT3G05345 67 / 9e-13 Chaperone DnaJ-domain superfamily protein (.1) AT1G77020 66 / 1e-11 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G21080 65 / 2e-11 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT1G76700 63 / 6e-11 DNAJ heat shock N-terminal domain-containing protein (.1) AT4G39150 61 / 3e-10 DNAJ heat shock N-terminal domain-containing protein (.1.2) AT2G21510 60 / 5e-10 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G28210 59 / 2e-09 ATJ1 DNAJ heat shock family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040990 [exp] 117 / 2e-29 AT5G23240 442 / 8e-153 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10022246 [exp] 99 / 1e-23 AT5G23240 139 / 2e-37 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008768 [exp] 92 / 2e-21 AT5G23240 141 / 6e-39 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10035855 [exp] 66 / 1e-11 AT5G48030 524 / 0.0 gametophytic factor 2 (.1) Lus10036638 [exp] 66 / 2e-11 AT5G48030 516 / 0.0 gametophytic factor 2 (.1) Lus10029916 [exp] 64 / 2e-11 AT3G05345 277 / 2e-94 Chaperone DnaJ-domain superfamily protein (.1) Lus10004485 [exp] 63 / 5e-11 AT3G05345 287 / 2e-98 Chaperone DnaJ-domain superfamily protein (.1) Lus10011934 [exp] 63 / 9e-11 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1) Lus10013198 [exp] 62 / 2e-10 AT1G21080 580 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G143400 [exp] 420 / 5e-148 AT2G42750 416 / 2e-146 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.007G072600 [exp] 118 / 1e-29 AT5G23240 461 / 4e-160 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G347600 [exp] 100 / 7e-24 AT5G23240 149 / 2e-41 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G074600 [exp] 71 / 1e-13 AT1G77020 593 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G185800 [exp] 70 / 4e-13 AT1G77020 582 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G260400 [exp] 67 / 3e-12 AT1G21080 585 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.002G000300 [exp] 64 / 3e-11 AT1G21080 602 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.009G065500 [exp] 64 / 4e-11 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.004G158300 [exp] 61 / 2e-10 AT4G39150 469 / 2e-167 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.001G271300 [exp] 61 / 3e-10 AT5G48030 530 / 0.0 gametophytic factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10020749 pacid=23140911 polypeptide=Lus10020749 locus=Lus10020749.g ID=Lus10020749.BGIv1.0 annot-version=v1.0 ATGGCTCAGCTGCTCTCTCCAGTCTGCACCGACCCATTCAAGCTTCACAACCCATGTCTCCCTTTCACCTCTACTCCTTCCTCCCGCCTCTCCTTCCCCA ATTCGCTGCGTTCCCATAGCCGCCGACGTGCTGCCGCCGGTAGGGTCAGGGTCGCCACCGGCGATCCTCCTTCCTCCACTGCCGACGACTATTATTCCGT TCTGGGTCTGCTTCCGGATGCAACGCCGGAGCAGATTAAGAAAGCGTATTACAATTGCATGAAAGCCTGCCATCCGGACCTGAGCGGCGATGATCCAGAG ACCACCAATTTCTGTATGTTCATCAACGAGGTCTATGAGGTGCTGAGTGACCCAGTTCAGCGTATGGTATATGACGAAATTCATGGCTATGCATTGTCCG GAATCAATCCTTTCCTCGACGAATCCCCTTGCGATCATGCTTTCGTCGACGAGTTCAGCTGCATAGGCTGCAAGAATTGTGCCAATGTGGCTCCTGATGT ATTTGGGATTGAGGAAGATTTCGGGAGAGCTAGAGTGTACAGCCAATGCGGTGCTGTTGATTTAGTTCAGCAGGCCATTGACAGTTGCCCTGTTGACTGC ATCCATTGGACTTCTGCAGCACAACTTTCTCTGCTCGAAGATGAAATGCGTCGAGTCGAGAGAGTCAATGTTGCACTGATGCTTTCTGGAATGGGGGCTG CTTCTGTAGATGTTTTCAGAATGGCAAGTAGTAGGTGGGAGAAGAGGCAAGCAAAAGTCTTGGAAAAGGCTAGGGTACAGATGATGAGGAACAGTGGTAA GGATTCTGATAAAAAGGAGGAATCATCATCCTCATATTGGAGCAATTTGTGGGGAAATCCAAAAGACCATCAGACCTCAGAGGAGGAGACGAAAGAAAGA GCGAGAAGAGCAGCTGCAGCGGCCAGGAGATGGAGGGAGTATTCAAGAAGGGGAGTCGACAAGCCTCCTACTTTCAAACTTCCAGATGCCGTCTCCAAGA AGGACAATTGA
AA sequence Show only first row Show all	>Lus10020749 pacid=23140911 polypeptide=Lus10020749 locus=Lus10020749.g ID=Lus10020749.BGIv1.0 annot-version=v1.0 MAQLLSPVCTDPFKLHNPCLPFTSTPSSRLSFPNSLRSHSRRRAAAGRVRVATGDPPSSTADDYYSVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPE TTNFCMFINEVYEVLSDPVQRMVYDEIHGYALSGINPFLDESPCDHAFVDEFSCIGCKNCANVAPDVFGIEEDFGRARVYSQCGAVDLVQQAIDSCPVDC IHWTSAAQLSLLEDEMRRVERVNVALMLSGMGAASVDVFRMASSRWEKRQAKVLEKARVQMMRNSGKDSDKKEESSSSYWSNLWGNPKDHQTSEEETKER ARRAAAAARRWREYSRRGVDKPPTFKLPDAVSKKDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42750			DNAJ heat shock N-terminal dom...		Lus10020749 [exp]	0	1
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10004485 [exp]	3.7	0.8338
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10001581 [exp]	4.9	0.8132
AT1G36160		GSD1, PAS3, GK,...	PASTICCINO 3, GLOSSYHEAD 1, GU...		Lus10024747 [exp]	8.5	0.7600
AT1G75100		JAC1	J-domain protein required for ...		Lus10032709 [exp]	8.5	0.8447
AT2G20920			Protein of unknown function (D...		Lus10005056 [exp]	9.2	0.7919
AT3G27110			Peptidase family M48 family pr...		Lus10032044 [exp]	9.4	0.8102
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10022212 [exp]	12.3	0.7587
AT3G27110			Peptidase family M48 family pr...		Lus10035210 [exp]	12.5	0.7897
AT1G13990			unknown protein		Lus10037142 [exp]	13.7	0.7847
AT3G11780			MD-2-related lipid recognition...		Lus10013596 [exp]	16.9	0.7751

Compare expression of checked genes

Lus10020749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.