Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59100 887 / 0 ATGSL11 glucan synthase-like 11 (.1) AT1G06490 886 / 0 CalS7, ATGSL7, ATGSL07 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) AT2G31960 554 / 4e-178 ATGSL3, ATGSL03 glucan synthase-like 3 (.1.2) AT5G13000 543 / 3e-174 CALS3, ATGSL12 callose synthase 3, glucan synthase-like 12 (.1.2) AT1G05570 543 / 4e-174 ATGSL6, ATGSL06, GSL6, CALS1 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) AT2G13680 518 / 1e-164 GLS2, ATGSL02, CALS5 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) AT3G14570 446 / 1e-138 ATGSL4, ATGSL04 glucan synthase-like 4 (.1.2) AT5G36870 425 / 3e-131 ATGSL9, ATGSL09 glucan synthase-like 9 (.1) AT3G07160 270 / 2e-77 CALS9, ATGSL10 glucan synthase-like 10 (.1) AT2G36850 263 / 6e-75 CHOR, ATGSL8, ATGSL08 CHORUS, glucan synthase-like 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001424 [exp] 1177 / 0 AT1G06490 2926 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Lus10001056 [exp] 640 / 0 AT1G06490 1596 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Lus10003920 [exp] 563 / 0 AT1G05570 3231 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10039199 [exp] 543 / 8e-174 AT5G13000 3524 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Lus10002097 [exp] 517 / 9e-170 AT2G13680 1916 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10037469 [exp] 504 / 1e-159 AT1G05570 3143 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10033482 [exp] 458 / 3e-149 AT2G13680 1556 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10020893 [exp] 473 / 1e-148 AT2G13680 3037 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10013744 [exp] 473 / 1e-148 AT1G05570 2981 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G058700 [exp] 974 / 0 AT1G06490 2961 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.005G203500 [exp] 969 / 0 AT1G06490 2914 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.001G230000 [exp] 548 / 1e-175 AT5G13000 3157 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.003G214200 [exp] 546 / 4e-175 AT5G13000 3363 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.005G058300 [exp] 533 / 1e-170 AT2G13680 3190 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Potri.001G012200 [exp] 529 / 1e-168 AT5G13000 3492 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.011G095100 [exp] 415 / 1e-127 AT3G14570 2863 / 0.0 glucan synthase-like 4 (.1.2) Potri.001G011900 [exp] 292 / 4e-85 AT3G07160 2981 / 0.0 glucan synthase-like 10 (.1) Potri.015G089300 [exp] 288 / 2e-83 AT2G36850 3066 / 0.0 CHORUS, glucan synthase-like 8 (.1) Potri.013G131300 [exp] 267 / 1e-76 AT4G03550 2752 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04652 [flax] [poplar] Vta1 Vta1 like
Representative CDS sequence Show only first row Show all	>Lus10020751 pacid=23140954 polypeptide=Lus10020751 locus=Lus10020751.g ID=Lus10020751.BGIv1.0 annot-version=v1.0 ATGGCGAGCACCAGTGGCACCAAGAGCGACCACCACCTCCCGAGGTCGCTTTCCCGTGCTTCCACCATGATGGTGGATTTGCGCGACGGCGACGCTCCGG TGATCGACAGTGAGGTCGTTCCGTCTTCGTTGGCTTCTATTGCTCCCATTCTCCGTGTTGCTAACGAGATTCAGGATGATAATCCCAGAGTCGCCTATCT ATGTCGGTTCCACGCATTTGAGAAAGCTCATAAGATGGATCCAACATCAAGTGGACGCGGTGTTCGCCAGTTCAAGACTTATCTGCTTCATAGACTTGAG AGGGAAGAAAGTGAAACAGAACCTCGTCTTGCGAGAACTGATCCTAGGGAAATACAATTGTATTACCAGAAGTTTTATGAGGAAAATATAAGAGATGGGC AGTATACAAAAAAACCGGAGGAGATGGCTAAAATTCTTCAGATTGCTTCAGTATTGTATGATGTGCTGAGAACAGTGGTTCCTGAATCCAGAGTGGAAGA AGAGACACATAAATATGCTAAGGATGTTGAGAAGAAAAGGGAGCAATATGAGCACTATAACCTTCTTCCTCTATATTCTGTTGGCTTAAAACCGGCAATA ATGGAACTTCCTGAGATTAAAGCTGCATTTAACGCTGTACGTAATGTGGACAATCTTCCGATGCCCAGAATCAGTTCCACTCATGGTGCCAACCATGACG TCCAGACTGGAGATATCAAACCTGTCAATGACATACTTGAATGGCTTTCTTCCCTTTTTGGATTCCAGAGAGGAAATGTGGCAAATCAGAGAGAGCACCT CATATTGCTATTAGCCAATATAGACACAAGGAAAAGGGGCGTTGAAGCTTATACAGAGTTAAGTACTAGTACAATTCTACAACTGATGGACAAAACTTTC AAAAACTATCTCTCCTGGTGCCACTATGTGCGAGTTGAAAGCAATCTCAGGTTCCCAGGAGGTTTTGATAAACCACAACTGGAGCTTATTTACATTGGAT TGTATTTATTGATATGGGGTGAAGCTTCAAATGTACGATTCATGCCAGAATGCATTTGCTATATCTTCCACAATATGGCATATGAAGTTTTTGGCGTATT GTTTCGCAATATACATCCTGTTAGTGGGGAGAAATACGAAACAGCTGCGCCTGATGATGAAGCCTTTCTGCGTAATGTAATATGTCCGATATACCAGGTT ATCCGTAAGGAAGCTAGGAGAAATAAAAGTGGGAAAGCAAGCCATTCTAGGTGGAGAAACTATGATGATCTAAATGAGTACTTCTGGTCAAAGAGATGTC TTAGGATAAAGTGGCCGATGGATCTTAAAGCGGACTTTTTTGTGCATTCAGATGAGGCCTTGCCAGCAAGTGAGAGGTCTAACCAGAGTGGCAGCGGAAG ACGAAAGTCCAAAACTAATTTTGTTGAAGTTCGTACTTTCTGGCACCTGTATAGAAGTTTTGACCGCATGTGGATCTTCTTTATCTTGGCCTTCCAGGCT ATGTTGATCATTGCTTGGAATTCTGGATCTCTTGCTGGCATTTTTGACCCAGACGTCTTCAGAAGTGTTTTGAGTATCTTTATCACTTCTGCTATTCTCA ATCTTCTGCGAGCTTTTCTTGATATAGTTCTCAGCTTTTACGCTTGGAAGAGCCTAAAATTCACACAGATATTGCGGTACCTGCTCAAGTTTGGAGTCGC AGCAGCATGGGCGGTTGCCATGCCGATTGCTTATTCCAAATCTGTTCAGAACCCAACAGGACTTATCAGATTTTTCAGCAGCTGGGCTAGTGACTGGCAG AATCAATCTCTATATAACTATGCTGTTGCTATTTATTTGCTACCCAACATCCTTTCCGCTCTATTTTTTGTGCTTCCACCGTTTCGAAGGACTATGGAGA AATCAAACTTTCGGATAATCACTCTCCTTATGTGGTGGGCTCAGGCAAGCATATTAAATTCTGCATGA
AA sequence Show only first row Show all	>Lus10020751 pacid=23140954 polypeptide=Lus10020751 locus=Lus10020751.g ID=Lus10020751.BGIv1.0 annot-version=v1.0 MASTSGTKSDHHLPRSLSRASTMMVDLRDGDAPVIDSEVVPSSLASIAPILRVANEIQDDNPRVAYLCRFHAFEKAHKMDPTSSGRGVRQFKTYLLHRLE REESETEPRLARTDPREIQLYYQKFYEENIRDGQYTKKPEEMAKILQIASVLYDVLRTVVPESRVEEETHKYAKDVEKKREQYEHYNLLPLYSVGLKPAI MELPEIKAAFNAVRNVDNLPMPRISSTHGANHDVQTGDIKPVNDILEWLSSLFGFQRGNVANQREHLILLLANIDTRKRGVEAYTELSTSTILQLMDKTF KNYLSWCHYVRVESNLRFPGGFDKPQLELIYIGLYLLIWGEASNVRFMPECICYIFHNMAYEVFGVLFRNIHPVSGEKYETAAPDDEAFLRNVICPIYQV IRKEARRNKSGKASHSRWRNYDDLNEYFWSKRCLRIKWPMDLKADFFVHSDEALPASERSNQSGSGRRKSKTNFVEVRTFWHLYRSFDRMWIFFILAFQA MLIIAWNSGSLAGIFDPDVFRSVLSIFITSAILNLLRAFLDIVLSFYAWKSLKFTQILRYLLKFGVAAAWAVAMPIAYSKSVQNPTGLIRFFSSWASDWQ NQSLYNYAVAIYLLPNILSALFFVLPPFRRTMEKSNFRIITLLMWWAQASILNSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59100		ATGSL11	glucan synthase-like 11 (.1)		Lus10020751 [exp]	0	1
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10035784 [exp]	2.8	0.9116
AT5G62890			Xanthine/uracil permease famil...		Lus10029191 [exp]	3.7	0.9060
AT3G14570		ATGSL4, ATGSL04	glucan synthase-like 4 (.1.2)		Lus10042478 [exp]	4.2	0.8743
AT1G04600		ATXIA, XIA	myosin XI A (.1)		Lus10035246 [exp]	4.6	0.8327
AT5G39420		CDC2CAT	CDC2C (.1)		Lus10005228 [exp]	6.7	0.8999
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10036242 [exp]	8.2	0.8840
AT5G06850			C2 calcium/lipid-binding plant...		Lus10037480 [exp]	9.4	0.8613
AT1G67720			Leucine-rich repeat protein ki...		Lus10036935 [exp]	9.5	0.8720
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10001424 [exp]	9.5	0.8338
AT1G67720			Leucine-rich repeat protein ki...		Lus10037051 [exp]	10.0	0.8835

Compare expression of checked genes

Lus10020751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.