Plant FIBer expression Database

Lus10020752 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G06475 50 / 6e-09 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007328
[exp]
140 / 6e-44 AT1G06475 51 / 3e-09 unknown protein
Lus10004931
[exp]
38 / 0.0002 AT1G06475 47 / 7e-08 unknown protein
Lus10025392
[exp]
38 / 0.0004 AT1G06475 59 / 1e-12 unknown protein
Lus10015269
[exp]
37 / 0.0005 AT1G06475 59 / 1e-12 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G203800
[exp]
56 / 1e-11 AT1G06475 64 / 5e-15 unknown protein
Potri.002G058400
[exp]
56 / 2e-11 AT1G06475 64 / 5e-15 unknown protein
Potri.004G131200
[exp]
41 / 1e-05 AT5G46295 / unknown protein
Potri.011G079900
[exp]
40 / 3e-05 AT5G46295 57 / 3e-12 unknown protein
PFAM info
Representative CDS sequence
>Lus10020752 pacid=23140896 polypeptide=Lus10020752 locus=Lus10020752.g ID=Lus10020752.BGIv1.0 annot-version=v1.0
ATGGCAACCGATTCGATGATTGCAGCAGCTTCAGGAATCACGACTTGGCCATCGTCCCTGAGGAAATCGCTGAAGATCAAGAACAAGAAATCGGAGGCGA
AGAAAGATCAGTCTGAGCTGGAGGAAGATCAGGTGGCGGTGCTTTCGGGATGGAGGTCGCGGTCTTGGGCGTTGAGGAGTAAGAAATGGCGGTGGAGGTC
TTCGTCGCTGAGAAAGCTGAGATTCGCTGAGTTGCAGATATTTCAGCTGATCCACAGGAAGATCATCGACAAATTCGTGTTTAGAGTTATGTACGTGGCG
GAGGCTGTCGTCCTCGTCTCTACCCTCTGCTTCTTCTACGTCGTCTGCGGCGGCAGATTGTGA
AA sequence
>Lus10020752 pacid=23140896 polypeptide=Lus10020752 locus=Lus10020752.g ID=Lus10020752.BGIv1.0 annot-version=v1.0
MATDSMIAAASGITTWPSSLRKSLKIKNKKSEAKKDQSELEEDQVAVLSGWRSRSWALRSKKWRWRSSSLRKLRFAELQIFQLIHRKIIDKFVFRVMYVA
EAVVLVSTLCFFYVVCGGRL

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G06475 unknown protein Lus10020752
[exp]
0 1
AT3G07490 AtCML3, AGD11 calmodulin-like 3, ARF-GAP dom... Lus10009564
[exp]
2.0 0.8930
AT2G02010 GAD4 glutamate decarboxylase 4 (.1) Lus10031934
[exp]
2.0 0.8428
AT4G29130 GIN2, ATHXK1 GLUCOSE INSENSITIVE 2, ARABIDO... Lus10006843
[exp]
3.2 0.8549
AT4G37250 Leucine-rich repeat protein ki... Lus10030333
[exp]
3.7 0.8341
AT5G63180 Pectin lyase-like superfamily ... Lus10013668
[exp]
4.6 0.8503
AT3G52500 Eukaryotic aspartyl protease f... Lus10013324
[exp]
6.3 0.8279
AT5G63180 Pectin lyase-like superfamily ... Lus10013667
[exp]
6.5 0.8400
AT1G01540 Protein kinase superfamily pro... Lus10007919
[exp]
11.6 0.8213
AT2G18910 hydroxyproline-rich glycoprote... Lus10006958
[exp]
12.4 0.8124
AT5G11890 EMB3135 EMBRYO DEFECTIVE 3135, unknown... Lus10026428
[exp]
15.5 0.8416

Lus10020752 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.