Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67930 77 / 5e-16 Golgi transport complex protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007329 [exp] 0 / 1 AT1G67930 89 / 5e-36 Golgi transport complex protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G058300 [exp] 90 / 1e-20 AT1G67930 1066 / 0.0 Golgi transport complex protein-related (.1) Potri.005G203900 [exp] 82 / 8e-18 AT1G67930 1091 / 0.0 Golgi transport complex protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF10392 [flax] [poplar] COG5 Golgi transport complex subunit 5
Representative CDS sequence Show only first row Show all	>Lus10020753 pacid=23140945 polypeptide=Lus10020753 locus=Lus10020753.g ID=Lus10020753.BGIv1.0 annot-version=v1.0 ATGGCGTCGCCGGCGGCGATCCAGAGATCTCAACTCTCTCCATCTTCCTCCCCTCTCCAGAAACTTTCCACTTTCAAGAATCCTACCGTCTCCGACACCA CCACAGCCAACGCCGCTTCTCCGCTCGACTCATTCGCAAATGACCCGATCCTGTCTCCTTTTCTATCCCCTTCTTTCTCCACCACATCGTTTTCCTCAGC TGCTCTATCCTCCGGTTCCCCTGCATCGACCGCCGAGCGCCTCCACAACGCAATTCGCCTCCTCGAATCTCAGCTGCGCACCGAAGTCCTTTCGCGCCAC CCGGAACTCCTCAACCAGCTGTCCTCTCTCAAGCACGCCGAGCACGCGCTCTCCACCGTCCGATCCGCCGTCGCATCGCTCCACTCCCCCGTTCCCCGTG CGCGGTCCGACCTCACACCGATCCGAGCTCTCCGACCCGCACAAGTCCATCCAGTCGAAGACCTCGCAGCTCTCCAATCTACATTCCACCGCCGAGCTAT TGCAGCACACGATCCGAGCGCTTCGGCTGGCGGAGGAAAAGCGGGGCGCCGCACCCGCTCCACACGCGGGAGAAGCTGCGGGACCTCGCATCCGCGTCCG AGGCGGAGCCTGAAAAGCTTGATCTCGCCAAGGCAGCACAGCTGCATTGCGACATTCTGA
AA sequence Show only first row Show all	>Lus10020753 pacid=23140945 polypeptide=Lus10020753 locus=Lus10020753.g ID=Lus10020753.BGIv1.0 annot-version=v1.0 MASPAAIQRSQLSPSSSPLQKLSTFKNPTVSDTTTANAASPLDSFANDPILSPFLSPSFSTTSFSSAALSSGSPASTAERLHNAIRLLESQLRTEVLSRH PELLNQLSSLKHAEHALSTVRSAVASLHSPVPRARSDLTPIRALRPAQVHPVEDLAALQSTFHRRAIAAHDPSASAGGGKAGRRTRSTRGRSCGTSHPRP RRSLKSLISPRQHSCIATF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67930			Golgi transport complex protei...		Lus10020753 [exp]	0	1
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10001675 [exp]	1.0	0.9376
AT5G45330		DCP5-L	decapping 5-like (.1)		Lus10035052 [exp]	2.0	0.9073
AT1G67930			Golgi transport complex protei...		Lus10007329 [exp]	4.6	0.9030
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Lus10009595 [exp]	5.5	0.8951
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10026336 [exp]	9.4	0.9021
AT5G13390		NEF1	no exine formation 1 (.1)		Lus10002568 [exp]	9.9	0.8711
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Lus10023305 [exp]	11.9	0.8400
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10001291 [exp]	15.0	0.8887
AT5G51430		EYE	EMBRYO YELLOW, conserved oligo...		Lus10031731 [exp]	15.5	0.8736
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004937 [exp]	15.7	0.8954

Compare expression of checked genes

Lus10020753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.