Plant FIBer expression Database

Lus10020754 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67930 959 / 0 Golgi transport complex protein-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007330
[exp]
1229 / 0 AT1G67930 967 / 0.0 Golgi transport complex protein-related (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G203900
[exp]
1059 / 0 AT1G67930 1091 / 0.0 Golgi transport complex protein-related (.1)
Potri.002G058300
[exp]
1037 / 0 AT1G67930 1066 / 0.0 Golgi transport complex protein-related (.1)
PFAM info
Representative CDS sequence
>Lus10020754 pacid=23140834 polypeptide=Lus10020754 locus=Lus10020754.g ID=Lus10020754.BGIv1.0 annot-version=v1.0
ATGTGCGACGAGTACGACTTGGTTGGGATTGAAGTCGTGGACGAAGAACTGATGCTGGTGAGGGAAATTGGGGAGAGGCTGCGAAAGGAGGCGATGAAGG
TTCTCGAGAATGGGATGGAAGGGTTAAACCAGGCTGAAGTGGGAACTGGCTTGCAGGTTTTCTACAATTTGGGAGAGTTGAAGATGACTGTGGAACAGTT
GGTGAACAAGTACAAGGGAATTGGAGTGAAGAGTATAGGATCGGCATTGGATATGAAGGCGATTTCCATGGGAGGTGGTGGCAGCGGAGGGTTTGGACCC
GGAGGGATCAGAGGCAGTGGGACGCCTCAGATTGGAGGAGGAGCGAAGGCCAGAGATGGTGTTTGGCAGAGAATGACTAGTTGTATGGATCAGCTGCATT
CTATTATGGTTGCAGTTTGGCATTTGGAAAGGGTCCTTTCCAAGAAAAGGGATCCATTCACTCATGCCTTGCTCCTCGATGAAGTTATCAAGGAAGGGGA
TGCCATGTTGACGGAGCGAGTTTGGGAGGCATTAGTGAAGTCTTTTGCTACCCAGATGAAGTCTGCCTTTACTGCATCAAGCTTTGTGAAGGAAATATTT
ACTACAGGATATCCAAAGCTCATTTCAATGGTGGAAAATTTACTTGACCGAATATCACGTGATACAGATGTCAAAGGGGTTTCACCAGCAATTACTTTTG
AAGGAAACCAGCAGATGTTGGCAGCTATTGAAATTTTCCAGACTGCTTTCTTGACGTTGTGCTTAGGTCGCCTTTCAGATCTTGTAAATAACGTCTTCCC
TGTGTCAAGCAGAGGAAGTGTACCTTCAAAAGACCATATCTCAAAGATCATATCACGCATTCAGGAAGAGATTGAAGCTGTTCAGTTAGATGGGCGTCTG
ACTCTCTTAGTGCTGCGTGAAATTGGCAAAGTGTTGTTCCTCCTTGCTGAAAGAGCCGAGTACCAGATATCGGCTGGTCACGAGGCACGCCAAATCAGCG
GTCCCGTGACTCCTGCACAGACGAGGAACTTTATACTATCTCAACATCTGCAAGAAATTCACACACGTGTATCATCTATTGTTATGAAGCTCCCAAGCAT
TGCTGCTGAAGTACTATCTCCATCGTTAGGTGTAATTTATGGAGTCGCAAGAGACTCGGTGACACCCTTGTTTAAAGCAATGATCGACCGACTGGAATCC
TGCATTCTTCAAATTCATGATCAGAACTTTGGAGTCCTTGGCATGGATGCTGCAATGGACAACAACGCTTCACCATACATGGAGGAGCTGCAAAAATGTG
TTCTTCACTTCCGAAAGGAGTTCTTATCTAGGCTCTTACCATCTTCTGGGAACGCTATGGCTTCAGGCACAGAAACTATATGCACCCAGCTTGTTAGAAA
CATGGCGGCACGGATTCTAATATTCTTTGTCAGGCATGGCTCTTTAGTAAGACCACTCTCGGAGTCTGGGAAACTGAGAATGGCTAGAGACATGGCTGAG
CTGGAGTTAACTGTAGGACAGAATCTGTTCCCAGTAGAACAACTTGGTGCACCTTATCGAGCTCTTCGGGCCTTCCGTCCTCTTATATTTTTGGAGACAT
CTCAACTGGCATCTTCTCCTCTATTTCAAGACCTGCCACTGAACGTCATACTTCATCACCTATATTCTCGAGGCCCGGACGATCTGCTGTCGCCGATGCA
AAGAAATAAGCTTACTCCTCTTCAGTATTCGTTATGGCTTGATTCTCAAGGGGAGGATCAGATATGGAAAGGTGTGAAAGCCACCTTAGATGATTATGCA
GCAAAAGTCAGGTCAAGAGGAGACAAAGAATTCAGCCCTGTATATCCCCTTATGATCCAGTTAGGCTCTTCTTCCATGGACAATGCTAAAGGCTCTCGTT
TGCCGGCTTGA
AA sequence
>Lus10020754 pacid=23140834 polypeptide=Lus10020754 locus=Lus10020754.g ID=Lus10020754.BGIv1.0 annot-version=v1.0
MCDEYDLVGIEVVDEELMLVREIGERLRKEAMKVLENGMEGLNQAEVGTGLQVFYNLGELKMTVEQLVNKYKGIGVKSIGSALDMKAISMGGGGSGGFGP
GGIRGSGTPQIGGGAKARDGVWQRMTSCMDQLHSIMVAVWHLERVLSKKRDPFTHALLLDEVIKEGDAMLTERVWEALVKSFATQMKSAFTASSFVKEIF
TTGYPKLISMVENLLDRISRDTDVKGVSPAITFEGNQQMLAAIEIFQTAFLTLCLGRLSDLVNNVFPVSSRGSVPSKDHISKIISRIQEEIEAVQLDGRL
TLLVLREIGKVLFLLAERAEYQISAGHEARQISGPVTPAQTRNFILSQHLQEIHTRVSSIVMKLPSIAAEVLSPSLGVIYGVARDSVTPLFKAMIDRLES
CILQIHDQNFGVLGMDAAMDNNASPYMEELQKCVLHFRKEFLSRLLPSSGNAMASGTETICTQLVRNMAARILIFFVRHGSLVRPLSESGKLRMARDMAE
LELTVGQNLFPVEQLGAPYRALRAFRPLIFLETSQLASSPLFQDLPLNVILHHLYSRGPDDLLSPMQRNKLTPLQYSLWLDSQGEDQIWKGVKATLDDYA
AKVRSRGDKEFSPVYPLMIQLGSSSMDNAKGSRLPA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G67930 Golgi transport complex protei... Lus10020754
[exp]
0 1
AT1G67930 Golgi transport complex protei... Lus10007330
[exp]
1.0 0.9569
AT2G17980 ATSLY1 Sec1/munc18-like (SM) proteins... Lus10023936
[exp]
2.0 0.9444
AT3G13772 AtTMN7 transmembrane nine 7 (.1) Lus10037643
[exp]
3.5 0.9378
AT2G17980 ATSLY1 Sec1/munc18-like (SM) proteins... Lus10014435
[exp]
5.3 0.9378
AT4G13940 MEE58, EMB1395,... MATERNAL EFFECT EMBRYO ARREST ... Lus10022559
[exp]
6.3 0.9343
AT3G16200 unknown protein Lus10037579
[exp]
7.4 0.9045
AT1G27600 IRX9-L, I9H IRREGULAR XYLEM 9-LIKE, IRREGU... Lus10007692
[exp]
9.2 0.9014
AT1G71070 Core-2/I-branching beta-1,6-N-... Lus10010887
[exp]
9.5 0.9140
AT5G05010 clathrin adaptor complexes med... Lus10017131
[exp]
9.8 0.9121
AT5G51430 EYE EMBRYO YELLOW, conserved oligo... Lus10031731
[exp]
9.8 0.8911

Lus10020754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.