Plant FIBer expression Database

Lus10020756 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G42975 169 / 1e-53 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007332
[exp]
275 / 2e-95 AT2G42975 179 / 1e-57 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G204200
[exp]
156 / 1e-48 AT2G42975 182 / 6e-59 unknown protein
Potri.002G058000
[exp]
147 / 5e-45 AT2G42975 146 / 9e-45 unknown protein
PFAM info
Representative CDS sequence
>Lus10020756 pacid=23140904 polypeptide=Lus10020756 locus=Lus10020756.g ID=Lus10020756.BGIv1.0 annot-version=v1.0
ATGGCGTTCAATCTGAGCGCCGCTTCACTTTCTCAGATCGCTTCGTCGTCATCGTCCTCTTCAGCTTGCGGCCATCATTTTGTGTTCTTAAAACACAAGC
ACAATCCGTTGAAGCTCCGCCAGTTTTCTTCTTCCACGGCGTTTGTTCAGGCGGAGAGCACCGAGAGCGGGTTTTCGGATCCTCAACTTCCTTCTTCCCC
TTCCTCTTCTCCTGAATCGGCGTCCTCGTCACGCTCCCAGCTAGATCTCTTGGAACAACTTACATCTGGTACTGGATATGACAGTGATGGTACTTCTTAC
CAACTCACAATCCGTGAGCAGCTAGCGCGGTTGGCTGAGGATAGAGACGAAGACTTTAGCATTCAGTTGGGTAAGAATCTGAAGAAGGTCAGTCCTAAGT
TCTTAACTACTTCCCAGAAGAGAAACATTAAACGACAAGCTTACTTGAACGAAGTATCAAAGAGAAACGACTCTGTTTTCTTTGCTACTATCGGAGCCTT
TGTGCTTCTTCCACCTGTGATTATCTTAGGCATTGCCATAGCTTTGGGTTATGTTCAGCTTTTCCCATAG
AA sequence
>Lus10020756 pacid=23140904 polypeptide=Lus10020756 locus=Lus10020756.g ID=Lus10020756.BGIv1.0 annot-version=v1.0
MAFNLSAASLSQIASSSSSSSACGHHFVFLKHKHNPLKLRQFSSSTAFVQAESTESGFSDPQLPSSPSSSPESASSSRSQLDLLEQLTSGTGYDSDGTSY
QLTIREQLARLAEDRDEDFSIQLGKNLKKVSPKFLTTSQKRNIKRQAYLNEVSKRNDSVFFATIGAFVLLPPVIILGIAIALGYVQLFP

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G42975 unknown protein Lus10020756
[exp]
0 1
AT1G64850 Calcium-binding EF hand family... Lus10010653
[exp]
6.0 0.8041
AT1G75020 LPAT4 lysophosphatidyl acyltransfera... Lus10032727
[exp]
7.3 0.8021
AT3G19900 unknown protein Lus10034203
[exp]
7.7 0.8470
AT3G49870 ATARLA1C ADP-ribosylation factor-like A... Lus10012090
[exp]
10.5 0.7878
AT2G40830 RHC1A RING-H2 finger C1A (.1.2.3) Lus10001582
[exp]
29.9 0.7473
AT1G53670 MSRB1, ATMSRB1 methionine sulfoxide reductase... Lus10005593
[exp]
31.4 0.7807
AT3G11670 DGD1 DIGALACTOSYL DIACYLGLYCEROL DE... Lus10021273
[exp]
32.9 0.7702
AT4G31870 ATGPX7 glutathione peroxidase 7 (.1) Lus10003421
[exp]
33.7 0.7789
AT2G38185 RING/U-box superfamily protein... Lus10004813
[exp]
35.1 0.7648
AT3G10130 SOUL heme-binding family prote... Lus10022712
[exp]
38.2 0.7855

Lus10020756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.