Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06550 603 / 0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT5G65940 302 / 5e-100 CHY1 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) AT2G30660 292 / 3e-96 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT2G30650 291 / 9e-96 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT4G31810 273 / 2e-88 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT3G60510 269 / 5e-87 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) AT4G13360 186 / 1e-54 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT3G24360 179 / 4e-52 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2) AT4G16210 54 / 6e-08 ECHIA, E-COAH-2 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) AT5G43280 52 / 1e-07 ATDCI1 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007334 [exp] 781 / 0 AT1G06550 595 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10038717 [exp] 286 / 1e-91 AT5G65940 565 / 0.0 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Lus10010685 [exp] 280 / 4e-91 AT4G31810 575 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10007422 [exp] 273 / 2e-88 AT4G31810 568 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10028182 [exp] 256 / 2e-82 AT3G60510 453 / 6e-160 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Lus10042883 [exp] 224 / 1e-70 AT4G31810 394 / 4e-137 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10019396 [exp] 181 / 2e-52 AT4G13360 607 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10043253 [exp] 162 / 3e-45 AT4G13360 565 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10002583 [exp] 61 / 2e-10 AT5G43280 399 / 1e-141 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G057700 [exp] 677 / 0 AT1G06550 592 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.014G179000 [exp] 286 / 5e-94 AT5G65940 556 / 0.0 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.014G057400 [exp] 282 / 7e-92 AT3G60510 520 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Potri.001G156900 [exp] 280 / 4e-91 AT3G60510 432 / 9e-151 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Potri.018G018800 [exp] 271 / 2e-87 AT4G31810 565 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.018G004200 [exp] 261 / 4e-84 AT5G65940 430 / 2e-150 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004150 [exp] 261 / 4e-84 AT5G65940 428 / 6e-150 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.010G170200 [exp] 260 / 4e-83 AT5G65940 388 / 6e-133 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.006G277300 [exp] 257 / 2e-82 AT5G65940 397 / 1e-137 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004100 [exp] 252 / 2e-80 AT5G65940 393 / 6e-136 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00378 [flax] [poplar] ECH_1 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Lus10020758 pacid=23140880 polypeptide=Lus10020758 locus=Lus10020758.g ID=Lus10020758.BGIv1.0 annot-version=v1.0 ATGGCTCAAGAAGTTGTGAACCCAGAAGAGCAGGTTGTTCTTGGAGAAGAGATTGAGCGTGTAAGGGTGATCACATTGAACCGGGCCCGTCAATTGAATG TTATATCTTCCAAAGTGGTGTCTTTGCTGGCAACTTTCCTTGAGAAATGGGAGAAAGACGACAGTGTAGAGCTTATATTGATCAAAGGCGCTGGACGGGC ATTTTCTGCAGGCGGGGATCTGAAAATGTTCTATGACGGCAGGACATCAGAGGATTCGTGCCTTGAAGTGGTGTATAGGATGTACTGGCTCTGTTACCAT ATCCATTCATATAAGAAAACACAGGTTGCTCTTGTTAATGGGATTTCGATGGGAGGAGGTGCATCTCTAATGGTCCCAATGAAGTTCAGTGTAGTGACTG AGAAAACTGTTTTTGCAACACCAGAAGCAAGTATTGGATTTCATACAGATTGTGGGTTCTCCTACATACATTCACGCCTCCCTGGCCATCTCGGGGAGTT CTTGGCTTTGACTGGGGCAAGGCTCAATGGCAAGGAATTAGTGGCAGTTGGAATGGCAACCCATTTCGTACCATCTGAGAAACTGCCAGAACTAGAGAAG CGATTGATCAACTTGAACTCCGGTGACAAGGATGCTGTCAAATCTGTCATAGAGGAATTCTCTGAGGATGTTCAGCTTGGAGAAGACAGTATCTTAACCA AGCAGTCCGTCATCAATGAATGCTTTTCAAAGGACACAGTGGTTGATATCATCAAGTCATTTGAAGCAGCAGCAACCAAGGAAGGGAATGATTGGATAGT TCCTGTTCTGAAAGGATTGAAGAGATCATCACCCACTGGACTTAACATCACTCTTCGATCTATTCGTGAAGGAAGGAAGCAAACATTGGCTGAATGTCTG AAGAAAGAGTTTAGATTGACGATGAACATACTGCGAACCAAAATCTCTGGTGATGTCTATGAGGGTATAAGGGCTCTAACTATCGACAAGGATAACGCTC CGAAGTGGGATCCACCAACCTGGGATGAGGTTGATGATTCGAAGGTGGGCGTTGTGTTCCAGCCATTTGGGGAAGAGTTTGAGCTCCGGATCCCAGAGAA GGAAGAGAACAGGTGGAATGGCAAGTTTGAGAACTCGGTCTATGCGACTGCAAGTGCGAGAGACACGGTGAAATGA
AA sequence Show only first row Show all	>Lus10020758 pacid=23140880 polypeptide=Lus10020758 locus=Lus10020758.g ID=Lus10020758.BGIv1.0 annot-version=v1.0 MAQEVVNPEEQVVLGEEIERVRVITLNRARQLNVISSKVVSLLATFLEKWEKDDSVELILIKGAGRAFSAGGDLKMFYDGRTSEDSCLEVVYRMYWLCYH IHSYKKTQVALVNGISMGGGASLMVPMKFSVVTEKTVFATPEASIGFHTDCGFSYIHSRLPGHLGEFLALTGARLNGKELVAVGMATHFVPSEKLPELEK RLINLNSGDKDAVKSVIEEFSEDVQLGEDSILTKQSVINECFSKDTVVDIIKSFEAAATKEGNDWIVPVLKGLKRSSPTGLNITLRSIREGRKQTLAECL KKEFRLTMNILRTKISGDVYEGIRALTIDKDNAPKWDPPTWDEVDDSKVGVVFQPFGEEFELRIPEKEENRWNGKFENSVYATASARDTVK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06550			ATP-dependent caseinolytic (Cl...		Lus10020758 [exp]	0	1
AT2G46225		ABIL1, ABI1L1	ABI-1-like 1 (.1.2.3)		Lus10008737 [exp]	2.8	0.9243
AT3G14170			Plant protein of unknown funct...		Lus10013177 [exp]	4.6	0.9408
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10005709 [exp]	6.0	0.9093
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Lus10042913 [exp]	10.2	0.8701
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10021467 [exp]	10.7	0.8534
AT3G14170			Plant protein of unknown funct...		Lus10008138 [exp]	11.4	0.8906
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Lus10013040 [exp]	12.2	0.8656
AT2G21940		ATSK1	shikimate kinase 1 (.1.2.3.4.5...		Lus10035843 [exp]	16.4	0.9068
AT5G64860		DPE1	disproportionating enzyme (.1)		Lus10036626 [exp]	16.8	0.8990
AT3G27960			Tetratricopeptide repeat (TPR)...		Lus10008786 [exp]	16.9	0.8867

Compare expression of checked genes

Lus10020758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.