Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59080 372 / 3e-128 Eukaryotic aspartyl protease family protein (.1.2) AT2G42980 349 / 9e-119 Eukaryotic aspartyl protease family protein (.1) AT3G25700 160 / 2e-46 Eukaryotic aspartyl protease family protein (.1.2) AT1G25510 132 / 8e-36 Eukaryotic aspartyl protease family protein (.1) AT3G61820 130 / 4e-35 Eukaryotic aspartyl protease family protein (.1) AT1G01300 129 / 1e-34 Eukaryotic aspartyl protease family protein (.1) AT3G18490 127 / 6e-34 Eukaryotic aspartyl protease family protein (.1) AT5G10770 117 / 2e-30 Eukaryotic aspartyl protease family protein (.1) AT2G03200 116 / 6e-30 Eukaryotic aspartyl protease family protein (.1) AT3G20015 113 / 1e-28 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007335 [exp] 460 / 4e-162 AT3G59080 698 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10003999 [exp] 138 / 6e-38 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041494 [exp] 120 / 2e-31 AT3G25700 559 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10034270 [exp] 113 / 7e-31 AT3G25700 237 / 5e-77 Eukaryotic aspartyl protease family protein (.1.2) Lus10024148 [exp] 111 / 1e-28 AT3G54400 476 / 7e-169 Eukaryotic aspartyl protease family protein (.1) Lus10039503 [exp] 110 / 1e-28 AT3G54400 477 / 3e-169 Eukaryotic aspartyl protease family protein (.1) Lus10035961 [exp] 111 / 5e-28 AT2G03200 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10008654 [exp] 110 / 1e-27 AT3G54400 563 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10042978 [exp] 110 / 1e-27 AT3G18490 504 / 3e-176 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G204600 [exp] 386 / 7e-133 AT3G59080 686 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.010G128200 [exp] 149 / 4e-42 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G051800 [exp] 146 / 7e-41 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 141 / 6e-39 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.008G115900 [exp] 138 / 6e-38 AT3G25700 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.014G099400 [exp] 137 / 1e-37 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G204700 [exp] 126 / 1e-33 AT3G52500 504 / 5e-177 Eukaryotic aspartyl protease family protein (.1) Potri.009G162400 [exp] 124 / 6e-33 AT3G52500 396 / 1e-134 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 123 / 3e-32 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 119 / 1e-30 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10020759 pacid=23140806 polypeptide=Lus10020759 locus=Lus10020759.g ID=Lus10020759.BGIv1.0 annot-version=v1.0 ATGATCGGATGCGGCCATTGGAATCGAGGATTGTTCCATGGAGCTGCTGGATTGCTAGGATTAGGGAGAGGTCCTCTTTCATTTGCTTCACAGCTTCAGT CTTTATATGGACATTCTTTTTCATACTGTTTGGTTGATAGAAACAGTGAGAGTAACGTCACTAGCAAGCTGATCTTCGGAGAGGATAAGGATCTGATGAG CCATCCTAAGCTGAATTTCACTTCTTTAGTCGACGGAAAGGAGAATTCGAATCTCGTCGATACGTTCTACTACGTTCAAATCAAATCTATCGTAGTTGGC GGGGAAGTTCTCAACATACCTGAAGATACCTGGAATGTATTATCCGATGGTTCCGGTGGTACCATTGTCGATTCCGGTACTACGCTAAGCTACTTCTCCG AACCGGCTTACAAAGCGATTCGAGAAGCGTTTGTGAAGAGAGTGAAGAACAAGTATCCGGTGATGGATGATGTTCCGGTACTGGATCCTTGTTACAATGT CTCTGGTGTTAAGAACCTCGATCTGCCGGAGTTCAAGATTGTGTTTGCAGACGGAGCAGTGTGGGATTTCCCAGTGGAGAACTACTTCATATGGCTTCAG CCAGGGGAAGTTGTTTGCTTGGCGATTCTCGGGACTCCGAGGTCTGCTCTTTCGATCATTGGGAACTACCAGCAGCAGAACTTCCATATACTTTATGACA CTAAGAGGTCGAGAATCGGGTATGCGCCGATGAAGTGTGCTGATGTGTAG
AA sequence Show only first row Show all	>Lus10020759 pacid=23140806 polypeptide=Lus10020759 locus=Lus10020759.g ID=Lus10020759.BGIv1.0 annot-version=v1.0 MIGCGHWNRGLFHGAAGLLGLGRGPLSFASQLQSLYGHSFSYCLVDRNSESNVTSKLIFGEDKDLMSHPKLNFTSLVDGKENSNLVDTFYYVQIKSIVVG GEVLNIPEDTWNVLSDGSGGTIVDSGTTLSYFSEPAYKAIREAFVKRVKNKYPVMDDVPVLDPCYNVSGVKNLDLPEFKIVFADGAVWDFPVENYFIWLQ PGEVVCLAILGTPRSALSIIGNYQQQNFHILYDTKRSRIGYAPMKCADV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59080			Eukaryotic aspartyl protease f...		Lus10020759 [exp]	0	1
AT2G19130			S-locus lectin protein kinase ...		Lus10024348 [exp]	1.4	0.8718
AT1G70420			Protein of unknown function (D...		Lus10029153 [exp]	1.7	0.8729
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10013952 [exp]	2.4	0.8444
AT4G14450		ATBET12	unknown protein		Lus10041157 [exp]	4.0	0.8164
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10015167 [exp]	4.5	0.8367
AT2G39650			Protein of unknown function (D...		Lus10040293 [exp]	7.5	0.8190
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10030751 [exp]	8.1	0.7837
AT1G29290			unknown protein		Lus10029256 [exp]	9.8	0.8236
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Lus10037380 [exp]	10.9	0.7870
AT4G37420			Domain of unknown function (DU...		Lus10030740 [exp]	11.4	0.8014

Compare expression of checked genes

Lus10020759 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.