Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53580 391 / 5e-138 GLY3, GLX2-3, ETHE1 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) AT3G10850 74 / 2e-15 GLY2, GLX2-2 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) AT2G31350 67 / 2e-12 GLX2-5 glyoxalase 2-5 (.1.2) AT1G06130 59 / 9e-10 GLX2-4 glyoxalase 2-4 (.1.2) AT2G43430 56 / 8e-09 GLY1, GLX2-1 GLYOXALASE II, glyoxalase 2-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007336 [exp] 458 / 5e-164 AT1G53580 385 / 4e-135 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) Lus10034259 [exp] 76 / 8e-16 AT3G10850 440 / 2e-158 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10029086 [exp] 74 / 3e-15 AT3G10850 443 / 1e-159 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10017706 [exp] 68 / 7e-13 AT1G06130 501 / 3e-180 glyoxalase 2-4 (.1.2) Lus10029004 [exp] 67 / 1e-12 AT3G10850 397 / 1e-141 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10039860 [exp] 63 / 4e-11 AT1G06130 493 / 6e-177 glyoxalase 2-4 (.1.2) Lus10033662 [exp] 55 / 2e-08 AT2G43430 447 / 1e-159 GLYOXALASE II, glyoxalase 2-1 (.1.2) Lus10018625 [exp] 44 / 8e-05 AT2G31350 418 / 5e-148 glyoxalase 2-5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G204800 [exp] 419 / 5e-149 AT1G53580 395 / 3e-139 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) Potri.001G380100 [exp] 402 / 2e-142 AT1G53580 407 / 2e-144 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) Potri.019G062600 [exp] 85 / 4e-19 AT3G10850 415 / 1e-148 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Potri.017G026500 [exp] 62 / 6e-11 AT1G06130 515 / 0.0 glyoxalase 2-4 (.1.2) Potri.007G131300 [exp] 56 / 6e-09 AT1G06130 503 / 0.0 glyoxalase 2-4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0381 [flax] [poplar] Metallo-HOrase PF00753 [flax] [poplar] Lactamase_B Metallo-beta-lactamase superfamily
Representative CDS sequence Show only first row Show all	>Lus10020760 pacid=23140906 polypeptide=Lus10020760 locus=Lus10020760.g ID=Lus10020760.BGIv1.0 annot-version=v1.0 ATGCTACGAGCCAGCTTGATTCACCTCTTCTCATACTCTCCAAGGTCTCTTTCTCGCCAGCATCGAGTTCTTTCCTTCCCGAAATCGAGAGGCGGAGTGA TTCGTCGGAGCGCAATGAGTGATTACAGCAACTCGTCCTCCAGCAAGCTATTGTTTCGCCAGCTCTTCGAGAAGGACTCGTCGACTTACACTTATCTGCT GGCAGATGTTGGCCACCCCGATAAGCCTGCTCTGCTGATTGACCCAGTTGATAAGACGGTGGATAGGGACATCTCCCTAGTAAAAGACCTGGGTTTAAAG CTACAATATGCCATAAACACTCATGTTCATGCTGACCATATAACAGGGACTGGTTTGCTAAAGACAAAGATCCCTGGTGTGAAATCAGCTATCTCAAAAG CAAGCAACTCCAAAGCTGATATGCACGTTGAAGCTGGAGATAAGATCTATTTTGGAGATCTTTTCCTGGAGGTTAGAGCTACTCCAGGGCACACACAGGG CTGTGTCACCTATGTTACAGGAGATGGGCCTGACCAGCCAAAACCAAGGATGGCATTCACTGGGGATGCTGTGCTGATACGTGGATGTGGAAGAACGGAT TTCCAGGGTGGGAGCTCGCATCAACTCTATCATTCTGTGCATTCTCAGATCTTCACCTTGCCAGAAGACACCTTCATCTATCCTGCACATGATTACAAGG GATTCACTGTCAGCACAGTTGGAGAAGAGAAGCATCTTAATCCTAGGCTCACCAAAGATGAGGAAACATTCAAGAGCATCATGGAAAATCTGAATCTCCC ATACCCTAAAATGATCGATGTAGCAGTTCCAGCAAATCTAGTTTGTGGGTTGCAAGATCATTGA
AA sequence Show only first row Show all	>Lus10020760 pacid=23140906 polypeptide=Lus10020760 locus=Lus10020760.g ID=Lus10020760.BGIv1.0 annot-version=v1.0 MLRASLIHLFSYSPRSLSRQHRVLSFPKSRGGVIRRSAMSDYSNSSSSKLLFRQLFEKDSSTYTYLLADVGHPDKPALLIDPVDKTVDRDISLVKDLGLK LQYAINTHVHADHITGTGLLKTKIPGVKSAISKASNSKADMHVEAGDKIYFGDLFLEVRATPGHTQGCVTYVTGDGPDQPKPRMAFTGDAVLIRGCGRTD FQGGSSHQLYHSVHSQIFTLPEDTFIYPAHDYKGFTVSTVGEEKHLNPRLTKDEETFKSIMENLNLPYPKMIDVAVPANLVCGLQDH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53580		GLY3, GLX2-3, E...	GLYOXALASE 2-3, ETHE1-LIKE, gl...		Lus10020760 [exp]	0	1
AT2G38900			Serine protease inhibitor, pot...		Lus10035626 [exp]	4.7	0.8792
AT3G22550			Protein of unknown function (D...		Lus10035894 [exp]	10.0	0.8183
AT4G00840			DHHC-type zinc finger family p...		Lus10002694 [exp]	10.4	0.8426
AT4G26410			Uncharacterised conserved prot...		Lus10034621 [exp]	10.9	0.8001
AT2G23090			Uncharacterised protein family...		Lus10011535 [exp]	12.0	0.8288
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10008868 [exp]	17.7	0.8602
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039425 [exp]	23.2	0.8502
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10035481 [exp]	27.3	0.8404
AT3G10850		GLY2, GLX2-2	GLYOXALASE 2-2, Metallo-hydrol...		Lus10029086 [exp]	29.7	0.8325
AT2G28780			unknown protein		Lus10007010 [exp]	36.5	0.8416

Compare expression of checked genes

Lus10020760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.