Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06560 714 / 0 NOL1/NOP2/sun family protein (.1) AT3G13180 61 / 2e-09 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) AT5G66180 56 / 6e-08 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT5G26180 55 / 1e-07 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G26600 55 / 2e-07 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G55920 54 / 2e-07 OLI2 OLIGOCELLULA 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G22400 47 / 3e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G40000 45 / 0.0002 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007337 [exp] 1212 / 0 AT1G06560 725 / 0.0 NOL1/NOP2/sun family protein (.1) Lus10026452 [exp] 66 / 7e-11 AT5G26180 567 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10041897 [exp] 62 / 2e-09 AT4G10770 1097 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10025004 [exp] 60 / 3e-09 AT5G26180 566 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10016622 [exp] 58 / 2e-08 AT3G13180 759 / 0.0 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) Lus10028444 [exp] 56 / 5e-08 AT5G66180 534 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10023095 [exp] 53 / 6e-07 AT4G26600 736 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10032368 [exp] 53 / 6e-07 AT4G26600 736 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10022523 [exp] 52 / 7e-07 AT3G13180 323 / 1e-107 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G204900 [exp] 789 / 0 AT1G06560 758 / 0.0 NOL1/NOP2/sun family protein (.1) Potri.007G056800 [exp] 62 / 5e-10 AT5G66180 502 / 2e-178 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.001G368500 [exp] 61 / 2e-09 AT3G13180 770 / 0.0 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) Potri.006G224000 [exp] 59 / 4e-09 AT5G26180 585 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G369600 [exp] 57 / 4e-08 AT4G26600 696 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G096100 [exp] 45 / 0.0002 AT2G22400 1012 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [flax] [poplar] PUA PF01472 [flax] [poplar] PUA PUA domain CL0063 [flax] [poplar] NADP_Rossmann PF01189 [flax] [poplar] Methyltr_RsmB-F 16S rRNA methyltransferase RsmB/F
Representative CDS sequence Show only first row Show all	>Lus10020761 pacid=23140812 polypeptide=Lus10020761 locus=Lus10020761.g ID=Lus10020761.BGIv1.0 annot-version=v1.0 ATGAGAAGAGGGAAGGATTTTCTTCTGTCCACCATCCGCACGACCTCCTTCGCTCGCCGTCGTACCAACGGTAACTTCTGCACATTAGCACCTCTTCATC TTCCCAAGATGGACAACCAGTCAGAAGACTCAGAGCGTTACACTTTCAGTCCCGTCCTTCGATGGAACCCTGAGGTTGAGCAGTACTTCATCCACGCCTA TGGCGCTGACCACTTCTCCCGCATTTCTACAGCCCTAGCAAAACCGTCCTGTTATTCTTGTATACGAGTCAACTCGCTGAAGTCGACGAGCGACGCCGTG ATCGAGAAGCTTTGGGGAATCATAGGGGAAAATGAGATGGAAGGAGGTGACGACGAAGTAGAATGCGGAGGAAAGGCGAGTGATGAGAAGAGTCTTCTTG ATGAAAGCTGGAAAGATGGCCGAATTGCTAAGTGCAAGATCCCTGGATTGGACTACGTTGTGTTAGTCAAGGGATCAGGACCGCGCGCTGTTGATTATGG AAACGCACCTGGTGCTCCACCCAAGGAGGTGATGGTTAGCAGGAAATGTGCCGAAGCCGTTCTGCGGGGAGCTCAGGTGTATGTTCCTGGTGTGCTGGCT TGTAGCGCTCATGTTGAAAAAGGAGAGACAGTTGCCGTTTCAGTTGGGGTGGAGCAGCGGATGGCTGATGGTGGATGGGCTACTGGCATGACTCGTGGCA TGGTTTTACAGGGACTGGAGACAGGCAAGAAGGATATCTTAGTTTCCAATCCTCATTATAACGAAAGAAGAGGGCTGTATATTGGTCAAGGTAAAGCAAT GCTGTCAAGAACTGGATTATTCCGTGGTATGGAAGGAATTGCTGTAGATATGAATAATCGGGTATTTAAGCTCCCCTCTTTCCATGATGTGCTTGAGGGG GAAATATTTCTTCAGAACCTGCCCAGCATAATTGCTGCTCATGCCCTTGATCCCAAAAAGGGTGAACGCATACTGGACATGTGTGCAGCGCCAGGAGGAA AGACTACTGCAATTGCACATCTAATGAAAGATGAAGGTGAAGTAGTTGCAGCGGATAGGTCTCACAATAAGGTGTTAGATATTCAAAAACTGGTTGCTGA ATTGGGCTTTACATGCATAACGACTTACAGGCTAGATGCTCTCAAATCTGTATCCCAATCAAATGAATCCGTTGACAGTGGCATATCACAAAATTCCATT TCTATGACCACTAATGAGAAGCTAAAGTCATCAAGTGACCAGTTATCTGGTGATAAGACACGTGGGGAAAATGAAAATGTTTTCAGGGAGAAGAAAGATG ATAACAGCTATATGAGTCAAGCTGAAGTCAGAAAGAAAATGCGGCAAATGAAAAATGGGCTTGGGAAAAATAATGATTCATGCCGGCTTGAGAAGTTTAA AGGGTTTCTCCCTGCCAGTTTTGACCGGGTTCTGCTTGATGCTCCTTGTTCTGCTCTTGGTTTGAGGCCTAGGCTTTTTGCTGGAGAGGACACAATACAA TCTCTGAGAAACCATGGAACCTATCAGAGGAAAATGTTTGACCAAGCTGTTAAACTAGTTCGCCCCGGTGGAGTTATCGTGTATTCAACGTGCACACTAA ATCCTGGTGAGAATGAAGCATTGGTACGGTGCACACTAAATCCTGGTGAGAATGAAGCATTGGTACGGTATGCTTTGGACACTTACAAATTTCTCTCACT AGCTCATCAGCATCCGAGAGTCGGAGGACCTGGTCTTGTTGGTCATTATGAATTCCCAGATGGTTATATCGAGAAGTGGCTAAAGCCTGGAGAGGAAGAC TACGTTCAGAGATTCGATCCGTCGGGTCCCCTCGACACCATTGGATTCTTCATAGCCAAGTTTGTAGTTGGGTCGAAGGACAATGTCTAG
AA sequence Show only first row Show all	>Lus10020761 pacid=23140812 polypeptide=Lus10020761 locus=Lus10020761.g ID=Lus10020761.BGIv1.0 annot-version=v1.0 MRRGKDFLLSTIRTTSFARRRTNGNFCTLAPLHLPKMDNQSEDSERYTFSPVLRWNPEVEQYFIHAYGADHFSRISTALAKPSCYSCIRVNSLKSTSDAV IEKLWGIIGENEMEGGDDEVECGGKASDEKSLLDESWKDGRIAKCKIPGLDYVVLVKGSGPRAVDYGNAPGAPPKEVMVSRKCAEAVLRGAQVYVPGVLA CSAHVEKGETVAVSVGVEQRMADGGWATGMTRGMVLQGLETGKKDILVSNPHYNERRGLYIGQGKAMLSRTGLFRGMEGIAVDMNNRVFKLPSFHDVLEG EIFLQNLPSIIAAHALDPKKGERILDMCAAPGGKTTAIAHLMKDEGEVVAADRSHNKVLDIQKLVAELGFTCITTYRLDALKSVSQSNESVDSGISQNSI SMTTNEKLKSSSDQLSGDKTRGENENVFREKKDDNSYMSQAEVRKKMRQMKNGLGKNNDSCRLEKFKGFLPASFDRVLLDAPCSALGLRPRLFAGEDTIQ SLRNHGTYQRKMFDQAVKLVRPGGVIVYSTCTLNPGENEALVRCTLNPGENEALVRYALDTYKFLSLAHQHPRVGGPGLVGHYEFPDGYIEKWLKPGEED YVQRFDPSGPLDTIGFFIAKFVVGSKDNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06560			NOL1/NOP2/sun family protein (...		Lus10020761 [exp]	0	1
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10002021 [exp]	2.0	0.9360
AT1G30240			unknown protein		Lus10026071 [exp]	4.5	0.9248
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10030364 [exp]	5.7	0.9341
AT2G14050		MCM9	minichromosome maintenance 9 (...		Lus10023780 [exp]	6.9	0.9111
AT3G09720			P-loop containing nucleoside t...		Lus10013644 [exp]	9.3	0.9359
AT1G69070			unknown protein		Lus10036815 [exp]	9.5	0.9244
AT5G57250			Pentatricopeptide repeat (PPR)...		Lus10036510 [exp]	10.6	0.9061
AT2G40360			Transducin/WD40 repeat-like su...		Lus10023107 [exp]	11.2	0.9233
AT4G26600			S-adenosyl-L-methionine-depend...		Lus10032368 [exp]	11.4	0.9227
AT2G37650	GRAS	SCL9	GRAS family transcription fact...		Lus10010845 [exp]	11.7	0.9072

Compare expression of checked genes

Lus10020761 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.