Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29370 66 / 8e-11 Kinase-related protein of unknown function (DUF1296) (.1) AT1G29350 66 / 8e-11 Kinase-related protein of unknown function (DUF1296) (.1) AT4G18150 57 / 3e-08 Kinase-related protein of unknown function (DUF1296) (.1) AT3G13990 50 / 4e-06 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) AT5G46380 50 / 5e-06 Kinase-related protein of unknown function (DUF1296) (.1) AT3G07660 45 / 0.0001 Kinase-related protein of unknown function (DUF1296) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007339 [exp] 406 / 1e-133 AT1G29370 79 / 5e-15 Kinase-related protein of unknown function (DUF1296) (.1) Lus10007338 [exp] 104 / 1e-26 AT1G29370 71 / 1e-15 Kinase-related protein of unknown function (DUF1296) (.1) Lus10015262 [exp] 65 / 1e-10 AT1G29370 574 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10004543 [exp] 65 / 1e-10 AT1G29370 641 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10004604 [exp] 61 / 2e-09 AT1G29370 644 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10025382 [exp] 61 / 3e-09 AT1G29350 513 / 4e-171 Kinase-related protein of unknown function (DUF1296) (.1) Lus10036414 [exp] 56 / 1e-07 AT3G07660 656 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10041089 [exp] 56 / 1e-07 AT3G07660 662 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10015640 [exp] 54 / 4e-07 AT3G13990 561 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G059300 [exp] 150 / 7e-38 AT1G29350 172 / 3e-44 Kinase-related protein of unknown function (DUF1296) (.1) Potri.011G078800 [exp] 94 / 1e-19 AT1G29350 650 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.001G353100 [exp] 89 / 4e-18 AT1G29350 649 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.005G202851 [exp] 69 / 4e-12 AT1G29370 57 / 2e-08 Kinase-related protein of unknown function (DUF1296) (.1) Potri.014G169900 [exp] 60 / 4e-09 AT3G07660 491 / 1e-160 Kinase-related protein of unknown function (DUF1296) (.1) Potri.003G063300 [exp] 59 / 7e-09 AT3G13990 619 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Potri.002G217000 [exp] 57 / 3e-08 AT3G07660 600 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.001G170700 [exp] 56 / 1e-07 AT3G13990 557 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Potri.011G079800 [exp] 51 / 3e-06 AT3G07660 125 / 2e-29 Kinase-related protein of unknown function (DUF1296) (.1) Potri.001G370900 [exp] 49 / 1e-05 AT3G07660 124 / 3e-29 Kinase-related protein of unknown function (DUF1296) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF06972 [flax] [poplar] DUF1296 Protein of unknown function (DUF1296)
Representative CDS sequence Show only first row Show all	>Lus10020762 pacid=23140875 polypeptide=Lus10020762 locus=Lus10020762.g ID=Lus10020762.BGIv1.0 annot-version=v1.0 ATGGGGAGCGAAAGCGGAAGCAGAAGCAGCAATGGCGGCGGCGGCGGCGGCGCTACGACTCTCCAGCAAGTTCCGACGGCGTACAAGAAGATTGTTCAGA GTTTAAAGGAGGTAGTCAACAACGCCGACTACACCGACGCCGAGATCTACGCCGTTCTTCAGGACTGTGACATGGACCCCAATGAAGCCGTTCAGAAGCT ACTCTCGCAAGGTCTCGCAGAACCTGGTAAAGCAGTGTACAGGAGAGCTAATGGATCTGCTGGTCCTGTCTTACCTTCATCTTCTTTGACAAATCAAGTG AAAAATCCTAGTGACTGGTCTTCATCTCATAGTGATTCATTTGAAGGTAATAGTACTAGTAAGAACATAGGAACGGGTGATACATCTTCACAAATTTCTC AATCTTCTTGGGTGGGAGGTTCACTTGGACATGTTTCCATGGCTGACATTGTCAGGATGGGAGGACCTAACAAGAAGGGTATTCAAACATCAGTTGTGAC ATCATCGCACTCGCTACTAGATGTAGATTCTGATGGCTGGGACCATAATTCTTTTAAAACGTCATTTTCTCAGCCTGAAATAGACCAAAATGTTCAATAT CCACTTCTGCCAAATGGTTCAGAGGGTGTTCTTCAATCTGGTCGGCTTCGAAATGAGTTTGGGTTTGATGATGGGCGGCCTGAGCAGAGTTCAGACCATC CATCTGCATTTAGTAGCTCCATCGCTCCACAGTTGGATAGATTTTCCACCCAGAGTTATGTACATCGCACCAAAACTGAATTACACGTGAATGGTCCATA CGATGCAGCCACATCATTAGAGGCAGATGATGCTCCCAAGAATCGAGGCTTAGATTCTGTGAAACCGGCTCCCTCGTCTGCTACGAGAGCTTGTGTCCAT AAGCAATACTCCCCTGTCATTCCTATTGCTGAAATAGGAAACCGGTCTCATTTAGCATCGGATCTGAATTCTTTACCAGAAATATCACCTCCTGCTGAGA GCTTGCAGAAGCTGAGCTTGGAAGAGAAGCCTGCAGAAGTTACATCGGATAACAAACATGGCGTGGTTTTCCCAGATTACATTCAAACTTTAGCTGCTGA CTGCTCACATTTGAGCTTTGGGACATATAAACCTGGAACACACGTTCCAATTTCTGGGCCTGCAATGTCTGATTCCACAGAGAGTCACTTATCTTTTGCC CATGCTTTACCAATGTCCTATTCACAAGGTTTTCCTGGCAGTAGTCTTCCAAGGGAGCATGTACCATCATCACAGCCGTTCGCCCAGCCTCCCCTGACGT TAGAAGATATGGCGAAGTTGCATGGATATGCAGCTCTCTCTCAGATGTATGCCCACCCTCGATCCCCTTTGAAGCAGGCATATGAAGAAAGTTCTACTTA CCATGATTCCTTGGCGAGAATGAAGAACCTCTCACAACTGAATGGGGATGCTTCTAGGAGTAACTTTCTTCAGTCAGATGCCAATGTTTCAGGCTATGGA GCGTTTGGGAGGCAATCCAACTATAGGGAGAGCTTTCCTCGTGATTTTTCTTCAAATCTTTCTGGTTCTGCTGTCGGATATGGTGACGCTTTCCATTCTT CAGCTAATGGTGGAAACAATCTATCCTCACTCCCACAGAATGGCATGTCTTCTCCATGGGAGTACGGACTTGGTACAGGAACGTTATCAGGCATTCCAGA CAACCAGTATCGTGGTCAACGAGGATATAGTCAATTGCATCCTAGCTATAAGCAAGACGAGCAACTTTCTCGAAACTACAGTTCTCTTGGATATGGTAAC TTGTATCCTTCTCAAGGAAGTCTAGCACAAGAACAATGGAGAGACGCCGGTAATGCCAGTAGTTATCAAGGTCCATCATCCAAGCAACAACAAATCTGGG GGCAAAACTACTGA
AA sequence Show only first row Show all	>Lus10020762 pacid=23140875 polypeptide=Lus10020762 locus=Lus10020762.g ID=Lus10020762.BGIv1.0 annot-version=v1.0 MGSESGSRSSNGGGGGGATTLQQVPTAYKKIVQSLKEVVNNADYTDAEIYAVLQDCDMDPNEAVQKLLSQGLAEPGKAVYRRANGSAGPVLPSSSLTNQV KNPSDWSSSHSDSFEGNSTSKNIGTGDTSSQISQSSWVGGSLGHVSMADIVRMGGPNKKGIQTSVVTSSHSLLDVDSDGWDHNSFKTSFSQPEIDQNVQY PLLPNGSEGVLQSGRLRNEFGFDDGRPEQSSDHPSAFSSSIAPQLDRFSTQSYVHRTKTELHVNGPYDAATSLEADDAPKNRGLDSVKPAPSSATRACVH KQYSPVIPIAEIGNRSHLASDLNSLPEISPPAESLQKLSLEEKPAEVTSDNKHGVVFPDYIQTLAADCSHLSFGTYKPGTHVPISGPAMSDSTESHLSFA HALPMSYSQGFPGSSLPREHVPSSQPFAQPPLTLEDMAKLHGYAALSQMYAHPRSPLKQAYEESSTYHDSLARMKNLSQLNGDASRSNFLQSDANVSGYG AFGRQSNYRESFPRDFSSNLSGSAVGYGDAFHSSANGGNNLSSLPQNGMSSPWEYGLGTGTLSGIPDNQYRGQRGYSQLHPSYKQDEQLSRNYSSLGYGN LYPSQGSLAQEQWRDAGNASSYQGPSSKQQQIWGQNY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29370			Kinase-related protein of unkn...		Lus10020762 [exp]	0	1
AT5G24650			Mitochondrial import inner mem...		Lus10015593 [exp]	1.4	0.8472
AT5G01340		AtmSFC1	mitochondrial succinate-fumara...		Lus10005045 [exp]	3.0	0.8345
AT3G17970		ATTOC64-III	translocon at the outer membra...		Lus10009682 [exp]	3.2	0.8538
AT5G42390		SPP	stromal processing peptidase, ...		Lus10021971 [exp]	4.2	0.8256
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10014836 [exp]	6.0	0.8156
AT1G06440			Ubiquitin carboxyl-terminal hy...		Lus10041673 [exp]	7.5	0.8335
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10028054 [exp]	10.7	0.8021
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Lus10005111 [exp]	12.5	0.7854
AT1G28530			unknown protein		Lus10015294 [exp]	14.0	0.8089
AT3G10650		AtNUP1	unknown protein		Lus10008959 [exp]	17.6	0.8255

Compare expression of checked genes

Lus10020762 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.