Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42940 253 / 2e-84 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT2G45430 186 / 2e-57 AT-hook AHL22 AT-hook motif nuclear-localized protein 22 (.1) AT4G12050 184 / 1e-56 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT4G22810 184 / 2e-56 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT2G35270 181 / 8e-56 AT-hook GIK, 2-ATH, AHL21 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) AT4G14465 169 / 4e-51 AT-hook AHL20 AT-hook motif nuclear-localized protein 20 (.1) AT3G60870 164 / 1e-49 AT-hook AHL18 AT-hook motif nuclear-localized protein 18 (.1) AT1G76500 164 / 5e-49 AT-hook SOB3, AHL29 SUPPRESSOR OF PHYB-4#3, AT-hook motif nuclear-localized protein 29, Predicted AT-hook DNA-binding family protein (.1) AT4G35390 159 / 2e-47 AT-hook AGF1 AT-hook protein of GA feedback 1 (.1) AT3G04570 159 / 3e-47 AT-hook AHL19 AT-hook motif nuclear-localized protein 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031460 [exp] 201 / 4e-65 AT2G42940 214 / 1e-70 Predicted AT-hook DNA-binding family protein (.1) Lus10031458 [exp] 198 / 1e-63 AT2G42940 212 / 1e-69 Predicted AT-hook DNA-binding family protein (.1) Lus10007340 [exp] 178 / 6e-56 AT2G42940 152 / 6e-46 Predicted AT-hook DNA-binding family protein (.1) Lus10006577 [exp] 176 / 1e-53 AT3G04570 270 / 1e-89 AT-hook motif nuclear-localized protein 19 (.1) Lus10015862 [exp] 170 / 2e-51 AT3G60870 227 / 1e-73 AT-hook motif nuclear-localized protein 18 (.1) Lus10000519 [exp] 169 / 8e-51 AT2G35270 205 / 1e-64 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) Lus10002711 [exp] 166 / 1e-49 AT4G14465 211 / 1e-66 AT-hook motif nuclear-localized protein 20 (.1) Lus10009301 [exp] 165 / 2e-49 AT3G60870 223 / 4e-72 AT-hook motif nuclear-localized protein 18 (.1) Lus10042551 [exp] 140 / 3e-40 AT3G04570 202 / 4e-64 AT-hook motif nuclear-localized protein 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G059400 [exp] 332 / 3e-115 AT2G42940 311 / 2e-107 Predicted AT-hook DNA-binding family protein (.1) Potri.005G202700 [exp] 310 / 7e-107 AT2G42940 305 / 3e-105 Predicted AT-hook DNA-binding family protein (.1) Potri.003G116900 [exp] 209 / 8e-67 AT4G22810 258 / 5e-85 Predicted AT-hook DNA-binding family protein (.1) Potri.001G115200 [exp] 208 / 3e-66 AT4G22810 254 / 1e-83 Predicted AT-hook DNA-binding family protein (.1) Potri.002G149300 [exp] 204 / 2e-64 AT2G45430 226 / 1e-72 AT-hook motif nuclear-localized protein 22 (.1) Potri.014G070800 [exp] 200 / 3e-63 AT2G45430 222 / 5e-71 AT-hook motif nuclear-localized protein 22 (.1) Potri.010G074201 [exp] 192 / 3e-60 AT4G14465 256 / 3e-85 AT-hook motif nuclear-localized protein 20 (.1) Potri.013G044500 [exp] 189 / 4e-59 AT4G14465 162 / 3e-48 AT-hook motif nuclear-localized protein 20 (.1) Potri.001G142800 [exp] 187 / 4e-58 AT4G17800 300 / 6e-102 Predicted AT-hook DNA-binding family protein (.1) Potri.005G257200 [exp] 186 / 2e-57 AT1G76500 192 / 2e-59 SUPPRESSOR OF PHYB-4#3, AT-hook motif nuclear-localized protein 29, Predicted AT-hook DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Lus10020763 pacid=23140940 polypeptide=Lus10020763 locus=Lus10020763.g ID=Lus10020763.BGIv1.0 annot-version=v1.0 ATGGCTGGATTGGCAGATCAAAACACTCCTTGCTTAGGATACAACAGCAATATGGACTTCAACCACGAACCCAAAAAGGCCAATCACAGGCTGAGCATCG AGGCAAGCTTTGTATCCCAGAAGCTCCCTAAGGCTGTGACCCCTGTTTCGTCTGCACCCGAAGGTGAGGCGGTCAGGCGGCCTAGGGGAAGGCCAGCTGG CTCAAAGAACAAACCGAAGCCACCGATCATTGTCACTCGCGACAGTGCCAATGCCCTTCGTGCACATGCAATGGAGGTGAGCTCTGGTTGCGATGTAAGT GAGAGCTTAGTCAACTATGCAAGGAGGAAGCAGCGAGGCATATGCGTTCTCAGTGGGAGTGGATACGTGACCAATGTTACGTTGCGGCAACCGGCATCTT CCGGAGCCATCGTGACCCTCCACGGCCGATTCGAGATTCTCTCGTTGCTTGGCTCCATCTTGCCACCCCCGGCACCTTCCGGCATCACGGGGCTGACAAT CTATTTGGCTGGAGCTCAAGGCCAGGTGGTGGGTGGTTGTGTGGTTGGTGCACTGATAGCTTCTGGTCCTGTTGTGGTGATGGCCGCTTCCTTCATGAAT GCGACTTTCGATCGGCTGCCTTTGGACGAGGAGGAGATTGCTGCCGCTGTCCAGAATCAGCATTACCAGAACGGCCGCCACCACCACCATCACCATCTTG ATATGTCCGATGTGTTTGGGATTCCGCCGCAGAACTTGCTTACTAATGGCTCGAACCCTCCTGAAATTTACTCGTGGGCCACCGGCCGAGTCTCCAAATC CTAG
AA sequence Show only first row Show all	>Lus10020763 pacid=23140940 polypeptide=Lus10020763 locus=Lus10020763.g ID=Lus10020763.BGIv1.0 annot-version=v1.0 MAGLADQNTPCLGYNSNMDFNHEPKKANHRLSIEASFVSQKLPKAVTPVSSAPEGEAVRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDVS ESLVNYARRKQRGICVLSGSGYVTNVTLRQPASSGAIVTLHGRFEILSLLGSILPPPAPSGITGLTIYLAGAQGQVVGGCVVGALIASGPVVVMAASFMN ATFDRLPLDEEEIAAAVQNQHYQNGRHHHHHHLDMSDVFGIPPQNLLTNGSNPPEIYSWATGRVSKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10020763 [exp]	0	1
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10018828 [exp]	2.2	0.8086
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041680 [exp]	3.5	0.6902
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10007340 [exp]	4.0	0.7552
AT2G35658			unknown protein		Lus10000594 [exp]	5.3	0.6889
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Lus10036519 [exp]	6.9	0.7549
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10019077 [exp]	7.1	0.7194
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Lus10007209 [exp]	9.8	0.7193
AT1G11340			S-locus lectin protein kinase ...		Lus10017247 [exp]	14.7	0.6586
AT1G27170			transmembrane receptors;ATP bi...		Lus10020524 [exp]	18.5	0.7452
AT3G62550			Adenine nucleotide alpha hydro...		Lus10010013 [exp]	18.5	0.6772

Compare expression of checked genes

Lus10020763 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.