Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42920 225 / 8e-71 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G48910 182 / 6e-54 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62890 177 / 2e-52 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 177 / 4e-52 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22410 176 / 2e-51 SLO1 SLOW GROWTH 1 (.1) AT4G02750 176 / 4e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 174 / 3e-50 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G15930 172 / 4e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G44230 172 / 5e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59200 169 / 8e-50 OTP80 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007341 [exp] 393 / 1e-136 AT2G42920 610 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10030053 [exp] 191 / 7e-57 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 189 / 7e-56 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 184 / 4e-54 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024199 [exp] 183 / 2e-53 AT3G09040 1017 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040680 [exp] 182 / 2e-53 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000110 [exp] 173 / 2e-53 AT4G37380 413 / 9e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015898 [exp] 181 / 3e-53 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026006 [exp] 179 / 1e-52 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G202600 [exp] 275 / 2e-90 AT2G42920 660 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.018G040100 [exp] 211 / 5e-64 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G239600 [exp] 191 / 2e-57 AT5G59200 694 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G103600 [exp] 188 / 2e-56 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 188 / 6e-56 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 188 / 1e-55 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 184 / 1e-54 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G050200 [exp] 182 / 6e-54 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 182 / 1e-53 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G223900 [exp] 176 / 3e-52 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10020764 pacid=23140899 polypeptide=Lus10020764 locus=Lus10020764.g ID=Lus10020764.BGIv1.0 annot-version=v1.0 ATGATTCTAGGCCTGGCGACGAACGGTCATGAACAGGAAGCAATCGATCTCATCGGAAAGATTTCGTCCTCGAATTTGGATCCTGATTTCGACAGCTTCA TCGGCGTCTTGACGGCTTGTAATCACGCGGGCTTGGTCGAAACGGCCAAGGAGTATTTCTCTTTGATGATAGAAACTTACAAGATCAAACCTTTGATACA GCATTATAGCTGTATGGTCGATGTGCTTGGCCGAGCTGGGTTTCTGGAAGAGGCAGAAGAGCTCATAAAAGGGATGAGCATCAGTCCAGATGCTATCATA TGGGGATCTTTGTTGTCTTCGAGCGAGATACATGGGAACTTGGAGATGGCAAAACGAGCAGCAAAGCACCTCACTGATTTAGATCCGAGTGGAACATCGA GCTTCGTTCTTATGTCGGACGCTCATGCTTCATCCGGTCAATTTCAGGAAGCGATCGAGCAGAGGGTCGTTCCGAAAGAAAACCGGATTAAGAAAGTCCC TGGATGTAATTCGATCGAACTGGACGGAGAAGTCCACGAGTTTGTAGCTGGCGGAAGTTTGCATCCGGAAGCTGGAAAGATCTACGATGCTTCAGATGAA CTTGGATCGGTATTAAAGCAAACCGAATAG
AA sequence Show only first row Show all	>Lus10020764 pacid=23140899 polypeptide=Lus10020764 locus=Lus10020764.g ID=Lus10020764.BGIv1.0 annot-version=v1.0 MILGLATNGHEQEAIDLIGKISSSNLDPDFDSFIGVLTACNHAGLVETAKEYFSLMIETYKIKPLIQHYSCMVDVLGRAGFLEEAEELIKGMSISPDAII WGSLLSSSEIHGNLEMAKRAAKHLTDLDPSGTSSFVLMSDAHASSGQFQEAIEQRVVPKENRIKKVPGCNSIELDGEVHEFVAGGSLHPEAGKIYDASDE LGSVLKQTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10020764 [exp]	0	1
					Lus10011725 [exp]	2.6	0.8607
AT5G16030			unknown protein		Lus10017573 [exp]	3.2	0.8486
AT4G35290		ATGLUR2, ATGLR3...	GLUTAMATE RECEPTOR 3.2, glutam...		Lus10026552 [exp]	6.5	0.7989
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10003190 [exp]	7.7	0.8399
AT2G40770			zinc ion binding;DNA binding;h...		Lus10030511 [exp]	9.4	0.7554
AT1G09940		HEMA2	Glutamyl-tRNA reductase family...		Lus10042932 [exp]	12.0	0.8226
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10031354 [exp]	14.4	0.8439
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10042195 [exp]	15.0	0.8165
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10007341 [exp]	16.6	0.8380
AT5G13100			unknown protein		Lus10015761 [exp]	20.8	0.7947

Compare expression of checked genes

Lus10020764 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.