Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21610 125 / 4e-37 LOL2 lsd one like 2 (.1) AT1G32540 88 / 3e-22 LOL1 lsd one like 1 (.1.2.3) AT4G20380 82 / 7e-20 LSD1 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) AT1G02170 40 / 0.0004 AtMCP1b, ATMC1, LOL3, ATMCPB1, MCP1B, AMC1 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040081 [exp] 91 / 1e-22 AT1G32540 227 / 3e-76 lsd one like 1 (.1.2.3) Lus10035361 [exp] 88 / 2e-22 AT1G32540 233 / 5e-80 lsd one like 1 (.1.2.3) Lus10030969 [exp] 88 / 2e-22 AT1G32540 236 / 5e-81 lsd one like 1 (.1.2.3) Lus10038409 [exp] 88 / 4e-21 AT1G32540 179 / 2e-55 lsd one like 1 (.1.2.3) Lus10023392 [exp] 85 / 5e-21 AT4G20380 210 / 6e-70 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) Lus10000782 [exp] 84 / 7e-21 AT4G20380 160 / 4e-51 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) Lus10008066 [exp] 84 / 4e-20 AT4G20380 212 / 6e-70 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) Lus10007343 [exp] 74 / 5e-17 AT4G21610 57 / 1e-10 lsd one like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G043100 [exp] 148 / 3e-46 AT4G21610 131 / 7e-40 lsd one like 2 (.1) Potri.001G143900 [exp] 87 / 4e-22 AT1G32540 189 / 9e-63 lsd one like 1 (.1.2.3) Potri.003G090300 [exp] 86 / 7e-22 AT1G32540 194 / 1e-64 lsd one like 1 (.1.2.3) Potri.001G442400 [exp] 79 / 6e-19 AT4G20380 195 / 3e-64 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) Potri.011G154800 [exp] 78 / 2e-18 AT4G20380 205 / 5e-68 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) Potri.014G052500 [exp] 41 / 0.0002 AT1G02170 513 / 0.0 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06943 [flax] [poplar] zf-LSD1 LSD1 zinc finger
Representative CDS sequence Show only first row Show all	>Lus10020766 pacid=23140862 polypeptide=Lus10020766 locus=Lus10020766.g ID=Lus10020766.BGIv1.0 annot-version=v1.0 ATGGAGAACGAATCAGAATCTATGGAGGATATCGAACCGCCACCTCCTGGGTGGGAACCGATCCCTCCGTCACAGCCATCACTGCAACCTGCTACTCTCC CGCCGCCGCAATCGATTCCCCCGTCACAGCCATCCGAACAACCTGCTACTCTTCCTCCACCGCCGTCGTCCCCGCCGGCACTACCCCAACTTCAGCCGCA ATCAGTAGCGGAAGAACAAATGGCTCAGATGGTTTGTGGTTCATGCCAACGCCTTCTTTCATATCCGAAAGGGGCCAAGCATGTCAAATGCAGTTGTTGT GAGACGCTCAACTTTGTGCTGCAAGCTCATGAACTTGGACTCGTTAACTGTGGTAGCTGTCCTACTCTGCTTATGTACCCTTATGGATCCACATCAGTTC GTTGCTCATCTTGTCAAGCCGTGACAGAAATTGGAGAACATAACCAGCGTCCGCCATGGTCTGTTATACAAGGACACCCTCCAATATCTAATCCTAACGT GGTTCACTGA
AA sequence Show only first row Show all	>Lus10020766 pacid=23140862 polypeptide=Lus10020766 locus=Lus10020766.g ID=Lus10020766.BGIv1.0 annot-version=v1.0 MENESESMEDIEPPPPGWEPIPPSQPSLQPATLPPPQSIPPSQPSEQPATLPPPPSSPPALPQLQPQSVAEEQMAQMVCGSCQRLLSYPKGAKHVKCSCC ETLNFVLQAHELGLVNCGSCPTLLMYPYGSTSVRCSSCQAVTEIGEHNQRPPWSVIQGHPPISNPNVVH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21610		LOL2	lsd one like 2 (.1)		Lus10020766 [exp]	0	1
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10007291 [exp]	5.7	0.7790
AT5G45770		AtRLP55	receptor like protein 55 (.1)		Lus10039985 [exp]	6.9	0.7851
AT4G37090			unknown protein		Lus10000742 [exp]	9.8	0.8243
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10008929 [exp]	9.9	0.7798
AT5G01090			Concanavalin A-like lectin fam...		Lus10021117 [exp]	12.8	0.7935
AT3G09430			unknown protein		Lus10023771 [exp]	15.3	0.6552
AT4G04670			Met-10+ like family protein / ...		Lus10016343 [exp]	20.1	0.7680
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10004301 [exp]	24.7	0.7853
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Lus10010979 [exp]	26.5	0.7643
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10005897 [exp]	27.3	0.7433

Compare expression of checked genes

Lus10020766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.