Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06520 543 / 0 ATGPAT1, GPAT1 glycerol-3-phosphate acyltransferase 1 (.1) AT2G38110 395 / 3e-133 ATGPAT6, GPAT6 glycerol-3-phosphate acyltransferase 6 (.1) AT1G01610 381 / 2e-127 ATGPAT4, GPAT4 glycerol-3-phosphate acyltransferase 4 (.1) AT1G02390 380 / 9e-127 ATGPAT2, GPAT2 ARABIDOPSIS THALIANA GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2, glycerol-3-phosphate acyltransferase 2 (.1) AT4G01950 378 / 4e-126 ATGPAT3, GPAT3 glycerol-3-phosphate acyltransferase 3 (.1) AT5G06090 369 / 5e-123 ATGPAT7, GPAT7 glycerol-3-phosphate acyltransferase 7 (.1) AT3G11430 365 / 2e-121 ATGPAT5, GPAT5 glycerol-3-phosphate acyltransferase 5 (.1) AT4G00400 359 / 4e-119 AtGPAT8, GPAT8 glycerol-3-phosphate acyltransferase 8 (.1) AT3G11325 253 / 4e-79 Phospholipid/glycerol acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010934 [exp] 654 / 0 AT1G06520 605 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10031396 [exp] 652 / 0 AT1G06520 595 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10010741 [exp] 412 / 3e-139 AT2G38110 555 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10036684 [exp] 407 / 3e-137 AT2G38110 558 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10002500 [exp] 382 / 5e-128 AT2G38110 683 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10029839 [exp] 377 / 1e-126 AT4G01950 449 / 9e-155 glycerol-3-phosphate acyltransferase 3 (.1) Lus10001449 [exp] 376 / 5e-125 AT4G01950 517 / 2e-180 glycerol-3-phosphate acyltransferase 3 (.1) Lus10007344 [exp] 371 / 1e-124 AT1G06520 251 / 2e-77 glycerol-3-phosphate acyltransferase 1 (.1) Lus10004711 [exp] 360 / 2e-119 AT3G11430 743 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G202200 [exp] 613 / 0 AT1G06520 650 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Potri.002G192600 [exp] 410 / 4e-138 AT4G01950 601 / 0.0 glycerol-3-phosphate acyltransferase 3 (.1) Potri.016G113100 [exp] 408 / 6e-138 AT2G38110 789 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.016G063900 [exp] 404 / 3e-136 AT2G38110 533 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.010G201200 [exp] 399 / 7e-135 AT3G11430 720 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Potri.006G198100 [exp] 397 / 1e-133 AT2G38110 527 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G097800 [exp] 396 / 2e-133 AT2G38110 809 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.008G058200 [exp] 386 / 1e-129 AT5G06090 704 / 0.0 glycerol-3-phosphate acyltransferase 7 (.1) Potri.014G085500 [exp] 374 / 1e-124 AT4G00400 757 / 0.0 glycerol-3-phosphate acyltransferase 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [flax] [poplar] Acyltransferase PF01553 [flax] [poplar] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10020767 pacid=23140951 polypeptide=Lus10020767 locus=Lus10020767.g ID=Lus10020767.BGIv1.0 annot-version=v1.0 ATGGTGTTTCATCTGTACAGACTTGCAGAATGGATTGTATACCAGCTGCTAGCAAACTCCTTCTACAAAGCTGGCAAAAAAGCCAGAACCTTTGCCTTCT ACTTCCGCCTCAGAAACAACAACCCTTCTCCCAAGTCCAAGCAACACCATGTCGCATCAGGAACCAAAATCAACACATTGCTCCGGACCGATTCGTTCTT CCCTTACTTCATGCTGGTGGCCTTCGAAGGCGGCAGCATTCTGAGGGCATTCTTGCTTCTCGTTTCTTATCCTATCCTCTGGTTTCTTAACTACGAATCG CAGCTGAAAGCCATGATCTTTATCACTTTCTGTGGGCTGAAAGTTAAGGACATGGAAAGTGTTTCCAGAGCTGTTCTACCCAAATTCTACCTCGAAAACC TCCACTTCCAGGCTTATAACCAGCTGCTTATTGCTTCTTCTTCAAATTCGAAAGCTGTTGTGATCACTGGTGTTCCTAGAGTCATGGTGGAGTTGTTCCT CAAGGAGTATTTTGGTGTCGAGAATGTCGTCGGAACTGAGCTGAGCCAAGTTTCTGGAAAAGGCAGCAGCAGTAGTTACTTCACTGGGTTTGTCTCTGGG AAACCTGACGTTGGAATTGGGTCTTCTTCATCTGACCATCTCTTCCTTTCCTTCTATAAGGAAGGGAATGCGGTGAACAGAGCAGATTCTTCCAACTCAG CAATGCCGAGAGACAAATACCCTAAGCCATTGATCTTCCACGACGGAAGGCTGGCGTTTCTACCTACTCCGTCGGCAACTCTAGCAATGTTCCTATGGCT TCCGATAGGAATCCTCCTCGCCGTCTTCCGCCTCCTCGCCGGTATCCTCCTTCCGTACAATATCGCTTTACTCCTCGCGAGAATGAGCGGCGTTAGAGTT GATTTCCACGACTCCAGAGGAAATGCTGGGAAAAGGAAAACACCCGGTGATAGAAACGGAGGCGTTTTGTATGTCTGTACCCATCGGACCCTACTCGACC CGGTTTTCTTAAGCACGTGCCTGCGGAAGCCGCTCACGGCCGTGACTTACAGCCTGAGCAAGATGTCGGAGCTGATCGCCCCGATTAGGACGGTTCGCCT GACCCGAGATCGGACCCGAGACGGAGAGACGATGGAGAGGATGCTCCGGGAAGGGGATCTGGTGGTCTGCCCAGAAGGGACCACTTGCCGGGAGCCGTAC TTGCTCCGGTTCAGCTCACTGTTCGCCGAGCTGAGCGACGAGATAGTTCCGGTGGCGGTGAATACATCGGTGGGGATGTTCTACGGGACGACGGCGAGCG GGCTGAAATGGCTGGACCCGATTTTCTTCCTGATGAACCCGAGACCGATTTACTGGATCAGGGTGCTGGAGAAGCTGCCGGCGGAGATGACTTGCGGCGG CGGAGGGAAGTCCAGCTGGGACGTAGCGAATTACATACAGAAGCAGCTCGCCGGAGCTTTGGGGTTTGAGTGCACGTCGCTTACTAGGAAGGATAAGTAC TTGATGCTTGCCGGTAATGAAGGGATTGTTGATCGTCGATGA
AA sequence Show only first row Show all	>Lus10020767 pacid=23140951 polypeptide=Lus10020767 locus=Lus10020767.g ID=Lus10020767.BGIv1.0 annot-version=v1.0 MVFHLYRLAEWIVYQLLANSFYKAGKKARTFAFYFRLRNNNPSPKSKQHHVASGTKINTLLRTDSFFPYFMLVAFEGGSILRAFLLLVSYPILWFLNYES QLKAMIFITFCGLKVKDMESVSRAVLPKFYLENLHFQAYNQLLIASSSNSKAVVITGVPRVMVELFLKEYFGVENVVGTELSQVSGKGSSSSYFTGFVSG KPDVGIGSSSSDHLFLSFYKEGNAVNRADSSNSAMPRDKYPKPLIFHDGRLAFLPTPSATLAMFLWLPIGILLAVFRLLAGILLPYNIALLLARMSGVRV DFHDSRGNAGKRKTPGDRNGGVLYVCTHRTLLDPVFLSTCLRKPLTAVTYSLSKMSELIAPIRTVRLTRDRTRDGETMERMLREGDLVVCPEGTTCREPY LLRFSSLFAELSDEIVPVAVNTSVGMFYGTTASGLKWLDPIFFLMNPRPIYWIRVLEKLPAEMTCGGGGKSSWDVANYIQKQLAGALGFECTSLTRKDKY LMLAGNEGIVDRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10020767 [exp]	0	1
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10007344 [exp]	1.4	0.9387
AT1G54540			Late embryogenesis abundant (L...		Lus10031317 [exp]	3.9	0.9382
AT1G54540			Late embryogenesis abundant (L...		Lus10031888 [exp]	4.0	0.9417
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10039743 [exp]	5.0	0.9293
					Lus10021373 [exp]	8.2	0.9365
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10021696 [exp]	11.2	0.8906
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10039349 [exp]	12.2	0.9017
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10021664 [exp]	12.4	0.8422
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10000676 [exp]	12.7	0.8790
AT5G13580		ABCG6	ATP-binding cassette G6, ABC-2...		Lus10030306 [exp]	14.3	0.9108

Compare expression of checked genes

Lus10020767 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.