Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29400 752 / 0 AML5 MEI2-like protein 5 (.1.2) AT2G42890 640 / 0 AML2, MEI2 MEI2-like 2 (.1.2.3) AT4G18120 613 / 0 AML3 MEI2-like 3 (.1.2) AT5G07290 246 / 4e-69 AML4 MEI2-like 4 (.1) AT5G61960 238 / 2e-66 AML1 MEI2-like protein 1 (.1.2) AT3G26120 134 / 2e-32 TEL1 terminal EAR1-like 1 (.1) AT1G67770 114 / 2e-26 TEL2 terminal EAR1-like 2 (.1) AT5G07930 84 / 2e-17 MCT2 MEI2 C-terminal RRM only like 2 (.1.2.3) AT1G37140 81 / 7e-17 MCT1 MEI2 C-terminal RRM only like 1 (.1.2) AT5G54900 73 / 2e-13 ATRBP45A RNA-binding protein 45A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007346 [exp] 1516 / 0 AT1G29400 779 / 0.0 MEI2-like protein 5 (.1.2) Lus10004591 [exp] 952 / 0 AT1G29400 908 / 0.0 MEI2-like protein 5 (.1.2) Lus10011968 [exp] 945 / 0 AT1G29400 900 / 0.0 MEI2-like protein 5 (.1.2) Lus10032537 [exp] 467 / 6e-151 AT5G61960 664 / 0.0 MEI2-like protein 1 (.1.2) Lus10043204 [exp] 304 / 1e-89 AT5G61960 728 / 0.0 MEI2-like protein 1 (.1.2) Lus10036953 [exp] 125 / 2e-29 AT3G26120 429 / 7e-143 terminal EAR1-like 1 (.1) Lus10006234 [exp] 124 / 4e-29 AT3G26120 431 / 2e-144 terminal EAR1-like 1 (.1) Lus10002046 [exp] 99 / 2e-21 AT3G26120 298 / 4e-94 terminal EAR1-like 1 (.1) Lus10002047 [exp] 94 / 2e-21 AT3G26120 167 / 1e-48 terminal EAR1-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G202000 [exp] 1082 / 0 AT1G29400 778 / 0.0 MEI2-like protein 5 (.1.2) Potri.002G059800 [exp] 1071 / 0 AT1G29400 781 / 0.0 MEI2-like protein 5 (.1.2) Potri.015G106000 [exp] 572 / 0 AT5G61960 767 / 0.0 MEI2-like protein 1 (.1.2) Potri.003G162700 [exp] 369 / 2e-113 AT5G07290 645 / 0.0 MEI2-like 4 (.1) Potri.001G067300 [exp] 356 / 7e-109 AT5G61960 627 / 0.0 MEI2-like protein 1 (.1.2) Potri.012G107900 [exp] 298 / 4e-92 AT1G29400 288 / 2e-88 MEI2-like protein 5 (.1.2) Potri.012G107100 [exp] 305 / 6e-90 AT5G07290 750 / 0.0 MEI2-like 4 (.1) Potri.008G183000 [exp] 132 / 7e-32 AT3G26120 455 / 1e-152 terminal EAR1-like 1 (.1) Potri.010G051100 [exp] 131 / 1e-31 AT3G26120 259 / 3e-77 terminal EAR1-like 1 (.1) Potri.013G084400 [exp] 101 / 1e-22 AT3G26120 150 / 2e-40 terminal EAR1-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF04059 [flax] [poplar] RRM_2 RNA recognition motif 2 CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10020769 pacid=23140938 polypeptide=Lus10020769 locus=Lus10020769.g ID=Lus10020769.BGIv1.0 annot-version=v1.0 ATGGAGCCGAACTCCAAGGAGGAGGAGGAGGCTACACTCGGTTCTTCAGGTCCGATGAAAGGGCTGGTTCGAAATAGTTCTCCGAAAGGGGTCCTCGGTG CATGGGGCATTCCTCTGACATCATCCAGTGCTGCAAGCTTGTTCTCTAGCTCCTTGCCGGTTATTCGACAAGAAAAGAGGAGTTTCGGGGACACTGAGCA TTGTGGAGGCCAATCTCTTGATGATAGCTCAGCAACCTTCAGTAAGAACGATGCAGAGAGTGAAGCTCGGGATTCGTTTGAAGATGTTGAACCATCGCTT GGGAACTTCTTACCTGATGATGAAGATGAGCTTCTTGCTGGCATAATGGATGATTTTGACCTGAGTGGATTGCCTAGTCAGCTGGAAGATTTGGAAGAGT ATGATCTCTTTGGCAGCGGCGGAGGGATGGAGTTGGACTATGAGGCTCAGGAGAGTCTACAGTCTGGTTTGTCAAAGCTGAACGTTTCCGATGGGGTTAG TGCGACCGGTATTTCACAGTATGCTTTTCCCAGCGGCACAGGAACAGTGGCTGGGGAGCATCCCTATGGCGAACATCCATCGAGAACGTTATTTGTTAGG AATATCAACAGTAATGTGGAAGATTCCGAGTTGAGATCTCTATTCGAGCAATATGGGGATATTCGAACCTTATATACAGCATGCAAGCACAGGGGGTTTG TGATGATATCTTACTATGATATTCGAGATGCTCGAAATGCAATGCGTGCCCTGCAGAATAAGCCTGTGAGGAGAAGAAAACTGGATATACATTTTTCGAT TCCTAAGGATAACCCTTCAGAGAAGGACGTAAATCAAGGTACTCTGGTGGTGTTCAATCTTGATGCATCTGTTTCAAATGATGACTTGCGAAAGATATTT GGTGCATATGGTGAAGTCAAGGAGATACGAGAAACACCACACAAACAACATCATAAGTTCATCGAGTTCTATGATGTCCGAGCTGCAGAGGCTGCTCTGA AATCTCTAAATAGAAGTGATATAGGTGGTAAACGCATAAAGCTTGAACCTAGCCGCCCTGGTGGTGCGCGTCGAAGCTTAATGCATCAACTAACTAATGA GCTGGAGCAAGATGACTCGAGAATTTTCCGCCATCACATAGGCTCCCCGGTCGCCAATTCTCCTCCGGGTACATGGGCTCAATTCGGCAGTCCTGTCGAG CACAGTCCGTTTCAAAGTTTCAGCAAACCCTCAACTCTGGCAGCTTTCAGCCCTGTAAATGGAAATCATTTGCCCGGGTTAGCCTCAATTCTACCCTCTC ACGTGTCGAAAATAGCCCCTATTGGGAAAGACCAAGGATACGCAAGCAACACAGCGTATCAGCGTTCTCACTCCTTTCCTGATCAGAAACTGAGCAGTCC TGTTGACATGTCTGCTGCTTTTGCTGATTCAAATTCGAGCTCATCCGGCGTTGGAACATTGTCCGGTCCTCAGTTTCTTTGGGGAAGCCCCTCTACCAAT TCTGAGCAGGCCAACAACTCCTTCGGATGGCCAACTTCGTCACTGGGACGCGCCTTTCCTTCTGCTGCACAAGGAACTCGTCGTGGTGGTTCTCTGATCG GGCCACATCAACATCTTCACCATGTGGGATCTGCTCCAGCTGGTGTCCCCCTTGAGAGGCATTTCGGCTTTTTCCCGGAATCACCTAACACTTCATATAT GACTCCAGCTCCTTTTGGTGAAGTGGGATTGAACAGAAACTCCGGAAACTATATGATGAACATGTTTCCTCGTACTACCCTCCCTGGGGCCATGTCACTG CCAAGGAACGGCCAAATGTTTATTGGTAACAACTCTTATTCAGGGATGGGAATACTTGGTAGTGAGGCATTTGGTGAATATGGTCGGACCCGGCGATTGG ACAATGGTCTTAACCAGATGGATAGCAGGAGGCAGTATCAGCTTGATCTGAAGAAGATTGTTGGCGGTGAAGATGCTAGAACTACTTTGATGATAAAAAA CATCCCTAACAAGTACACATCAAAGATGCTTATGGCTGTTATCGATGAAAATCACAGGGGTAGCTATGACTTCCTCTATCTTCCCATCGATTTCAAGAAT AAATGCAATGTAGGCTATGCCTTCATCAACATGGTGTCCCCTGCTCACATCATTCCATTCTATGAGGAGTTCAATGGGAAGAAGTGGGAGAAGTTTAATA GCGAAAAGGTGGCTTCACTGGCGTATGCTAGAATCCAGGGCAAGGCTGCCCTTGTTATGCATTTTCAGAACTCAAGCTTAATGAATGAAGATAAGTGGTG CCGGCCAATTCTCTTCCACTCCGAGGGTGAAGGTAGCAGCGATCAGGAACACTTTTTATCTGGAAATTTGAACGTGTATGTTCGCCAGCCTGACGGATCC TACAGTGGAGATCCGCTGGATCATCCGGATGAAGAAATCCAAATGTGA
AA sequence Show only first row Show all	>Lus10020769 pacid=23140938 polypeptide=Lus10020769 locus=Lus10020769.g ID=Lus10020769.BGIv1.0 annot-version=v1.0 MEPNSKEEEEATLGSSGPMKGLVRNSSPKGVLGAWGIPLTSSSAASLFSSSLPVIRQEKRSFGDTEHCGGQSLDDSSATFSKNDAESEARDSFEDVEPSL GNFLPDDEDELLAGIMDDFDLSGLPSQLEDLEEYDLFGSGGGMELDYEAQESLQSGLSKLNVSDGVSATGISQYAFPSGTGTVAGEHPYGEHPSRTLFVR NINSNVEDSELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRDARNAMRALQNKPVRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDASVSNDDLRKIF GAYGEVKEIRETPHKQHHKFIEFYDVRAAEAALKSLNRSDIGGKRIKLEPSRPGGARRSLMHQLTNELEQDDSRIFRHHIGSPVANSPPGTWAQFGSPVE HSPFQSFSKPSTLAAFSPVNGNHLPGLASILPSHVSKIAPIGKDQGYASNTAYQRSHSFPDQKLSSPVDMSAAFADSNSSSSGVGTLSGPQFLWGSPSTN SEQANNSFGWPTSSLGRAFPSAAQGTRRGGSLIGPHQHLHHVGSAPAGVPLERHFGFFPESPNTSYMTPAPFGEVGLNRNSGNYMMNMFPRTTLPGAMSL PRNGQMFIGNNSYSGMGILGSEAFGEYGRTRRLDNGLNQMDSRRQYQLDLKKIVGGEDARTTLMIKNIPNKYTSKMLMAVIDENHRGSYDFLYLPIDFKN KCNVGYAFINMVSPAHIIPFYEEFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKWCRPILFHSEGEGSSDQEHFLSGNLNVYVRQPDGS YSGDPLDHPDEEIQM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10020769 [exp]	0	1
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10007346 [exp]	1.0	0.8583
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10023798 [exp]	5.5	0.8053
AT2G15230		ATLIP1	lipase 1 (.1)		Lus10002808 [exp]	6.5	0.8120
AT3G49060			U-box domain-containing protei...		Lus10039245 [exp]	9.4	0.7767
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Lus10040109 [exp]	9.5	0.7818
AT4G35550	HD	HB-4, WOX13, AT...	WUSCHEL related homeobox 13 (....		Lus10016026 [exp]	10.7	0.7549
AT1G08720		EDR1, ATEDR1	ENHANCED DISEASE RESISTANCE 1,...		Lus10000937 [exp]	12.5	0.7893
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10022078 [exp]	13.7	0.7929
AT1G69360			Plant protein of unknown funct...		Lus10036807 [exp]	14.0	0.7641
AT1G59650		CW14	Protein of unknown function (D...		Lus10039463 [exp]	15.2	0.7904

Compare expression of checked genes

Lus10020769 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.