Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06530 84 / 3e-18 PMD2 peroxisomal and mitochondrial division factor 2, Tropomyosin-related (.1) AT3G58840 77 / 7e-16 PMD1 peroxisomal and mitochondrial division factor 1, Tropomyosin-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007347 [exp] 358 / 3e-124 AT3G58840 148 / 3e-42 peroxisomal and mitochondrial division factor 1, Tropomyosin-related (.1.2) Lus10010937 [exp] 193 / 2e-59 AT3G58840 140 / 3e-39 peroxisomal and mitochondrial division factor 1, Tropomyosin-related (.1.2) Lus10031394 [exp] 190 / 3e-58 AT1G06530 130 / 1e-35 peroxisomal and mitochondrial division factor 2, Tropomyosin-related (.1) Lus10013266 [exp] 82 / 4e-19 ND / Lus10030789 [exp] 74 / 2e-16 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G060200 [exp] 142 / 4e-40 AT1G06530 91 / 5e-21 peroxisomal and mitochondrial division factor 2, Tropomyosin-related (.1) Potri.005G201400 [exp] 136 / 7e-38 AT1G06530 144 / 8e-41 peroxisomal and mitochondrial division factor 2, Tropomyosin-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020770 pacid=23140882 polypeptide=Lus10020770 locus=Lus10020770.g ID=Lus10020770.BGIv1.0 annot-version=v1.0 ATGTCAGACGATAAGGCAACTTCCGAGACGAACGGCGTCACAGCCGAGGAGGGTCAGGAGGTGGTGACCTTCGACAGCACTGACCCTGGGGACGTCGGCG AAGCGAAGCTGAAGCAGAGGATTGAATTCCTGGAGCGCCAGAACGAGTCGTTGATTAAGGAGAACGACGAGTACAAGGATCAGATTTCGAAGTTGAATGG GCAACTTGAGTCGCTGAAAGAGGAGGAATCCGAGATCATGTACAGACTCGAGGAGATGGAGAATGAGTTAGAAGACTCGGAAGAGATCAAGAGAACTCTA GATTCAATAGCGGCTCGAGCCAGCGAGCTCGAGACGGAAGTTTCCAGGCTCCAACACGATCTGATTACGTCGATGAGTCAGGGAGACGAGTACAGTACCT TGATTGAGGAGCTCAGGAGGGTGGTGGGCGATATGGAGGTGAAACTGGAGGAAGCAAAGAAGGAGAAGGCAGATTACGAGAAGAGAGTGAGGGAATTGGA GAGGAAAGTCTGTGTTCTTGAAGTGAAGGAGATCGAGGAGAAGAGTAAGAAAATAAGGCAGGAAGAGGAGATAAGGGAGAGAATCTCTGAGAAAGATAAG GAGTTGGCCAAATACAAGAAGAGTCTCGATGATTTGGAGAAGGAGCTGGCTGGTAAGTCTGAAATGGAGGAGAAGTTGATTGCCTCTGAAAACAGGACCA GAGACCTCGAAATGAAGATGGTGGGGTTGCAGAAGAAGGCTGAGGACGCTGAGAAGGTTATCGTTGGGATGAAACAGACGGCCGTTGAAACCATTAAGGG CATTGATCATGAAGATGGTGAAGATAAAGAAGAATTTGTTCTGCACTGGCCGATGGTGGTAATTGCATCTTCTGGCATTGTTGCCGTTGCAGCTGCAATG GCCTATCTCTTCTATGGAAGGACACATTGA
AA sequence Show only first row Show all	>Lus10020770 pacid=23140882 polypeptide=Lus10020770 locus=Lus10020770.g ID=Lus10020770.BGIv1.0 annot-version=v1.0 MSDDKATSETNGVTAEEGQEVVTFDSTDPGDVGEAKLKQRIEFLERQNESLIKENDEYKDQISKLNGQLESLKEEESEIMYRLEEMENELEDSEEIKRTL DSIAARASELETEVSRLQHDLITSMSQGDEYSTLIEELRRVVGDMEVKLEEAKKEKADYEKRVRELERKVCVLEVKEIEEKSKKIRQEEEIRERISEKDK ELAKYKKSLDDLEKELAGKSEMEEKLIASENRTRDLEMKMVGLQKKAEDAEKVIVGMKQTAVETIKGIDHEDGEDKEEFVLHWPMVVIASSGIVAVAAAM AYLFYGRTH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06530		PMD2	peroxisomal and mitochondrial ...		Lus10020770 [exp]	0	1
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10026662 [exp]	2.8	0.8257
AT5G07370		ATIPK2A, IPK2a	inositol polyphosphate kinase ...		Lus10009397 [exp]	8.2	0.7897
AT1G21870		GONST5	golgi nucleotide sugar transpo...		Lus10025645 [exp]	9.1	0.8158
AT4G38660			Pathogenesis-related thaumatin...		Lus10025055 [exp]	12.0	0.7923
					Lus10029272 [exp]	17.6	0.7880
AT1G51630			O-fucosyltransferase family pr...		Lus10037328 [exp]	30.2	0.7585
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10009385 [exp]	30.5	0.7711
AT5G02190		EMB24, ATASP38,...	PROMOTION OF CELL SURVIVAL 1, ...		Lus10010854 [exp]	32.0	0.7410
AT5G20500			Glutaredoxin family protein (....		Lus10021590 [exp]	33.3	0.7451
AT2G40840		DPE2	disproportionating enzyme 2 (....		Lus10035408 [exp]	34.9	0.7529

Compare expression of checked genes

Lus10020770 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.