Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58830 337 / 5e-115 haloacid dehalogenase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007350 [exp] 676 / 0 AT3G58830 338 / 2e-115 haloacid dehalogenase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G060600 [exp] 394 / 3e-137 AT3G58830 354 / 9e-122 haloacid dehalogenase (HAD) superfamily protein (.1) Potri.005G201100 [exp] 374 / 5e-131 AT3G58830 340 / 3e-118 haloacid dehalogenase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF09419 [flax] [poplar] PGP_phosphatase Mitochondrial PGP phosphatase
Representative CDS sequence Show only first row Show all	>Lus10020774 pacid=23140837 polypeptide=Lus10020774 locus=Lus10020774.g ID=Lus10020774.BGIv1.0 annot-version=v1.0 ATGCATTCCGCCTCTGCACTTCTTTGGCCGCCGGTCTGCCATTGCCCCAATAATCCACCCTTCATCACTGATTCCAATCTCAAGCTAAAGCCATCTTCTT TACCCTTTCACCAGCGCCATAATTCGTTCAGGAAGCTCTGCTCCCTCGCCGCCGTCCACCCAACCAACAATCGGGACAGAGGTGAGTCGTCGGGTCAGTG CGGGAGCAGCAGGGAGTTGTCTCGGTCCTATTCTGTGTTGGACGATTTCCGCGATTCAATTCGGTTTAACGGGTTCGCTTACAACAACCCACAAGACGAC ACCGAGGAACCAGGCCGAGGGAGGGAAGAGATTGGTGGTGAGTTCGAGGTGCCGCCTGTTCACAGAGGACTTTTCACAAACATGTGGTGGCCGGATTTTA GAGCGGCGTTCGGGCAGCGGATTAACTTCGAAGGGATTGCTTTTGCGGCTAGGGTTTTGTTTAAAGATAGGAATTTAGCTCTGCCTCATTTGGCGGTGCC GGATATAAGGTACATTGATTGGGCGGAGCTTCGTAGGCGTGGTTTCAAAGGTGTGGTGTTTGATAAGGATAACACCATTACTGTGCCGTACTCTTTGTCG CTATGGGATCCTCTCCGGTCGTCCATGAAGCAGTGTAAATCCGTTTTCGGGGACGATATGGCCGTGTTTAGCAACTCTGCTGGGCTTTTGGAGTATGATT ATGATGGTTCAAAAGCAATGGCATTAGAGAGGGCTATTGGTATCAAAGTCATTAGGCATAGAGTGAAGAAACCCGCAGGAACTGCTGAAGAAATTGAGAA GCATTTTGGCTGTACATCATCACAACTTATCATGGTGGGAGATAGACCATTCACGGACGTTGTATACGGTAATAAAAATGGGTTCTTGACCATATTAACA AAGCCATTGAGCACGGCCGAGGAGCCCTTCATTGTTAGACAGGTGAGGAAGCTGGAAATGGCGATTTTGAACTACTGGCTTAGAAGAGAGCTGAAGCCGA CTGGTCACAGTTTGCTACCGGATCCAATCCAATGTAGGAAAGAGAAGCCATCAGATTCTTAA
AA sequence Show only first row Show all	>Lus10020774 pacid=23140837 polypeptide=Lus10020774 locus=Lus10020774.g ID=Lus10020774.BGIv1.0 annot-version=v1.0 MHSASALLWPPVCHCPNNPPFITDSNLKLKPSSLPFHQRHNSFRKLCSLAAVHPTNNRDRGESSGQCGSSRELSRSYSVLDDFRDSIRFNGFAYNNPQDD TEEPGRGREEIGGEFEVPPVHRGLFTNMWWPDFRAAFGQRINFEGIAFAARVLFKDRNLALPHLAVPDIRYIDWAELRRRGFKGVVFDKDNTITVPYSLS LWDPLRSSMKQCKSVFGDDMAVFSNSAGLLEYDYDGSKAMALERAIGIKVIRHRVKKPAGTAEEIEKHFGCTSSQLIMVGDRPFTDVVYGNKNGFLTILT KPLSTAEEPFIVRQVRKLEMAILNYWLRRELKPTGHSLLPDPIQCRKEKPSDS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58830			haloacid dehalogenase (HAD) su...		Lus10020774 [exp]	0	1
AT5G08740		NDC1	NAD(P)H dehydrogenase C1 (.1)		Lus10014555 [exp]	2.4	0.8773
AT3G58830			haloacid dehalogenase (HAD) su...		Lus10007350 [exp]	2.4	0.8443
AT3G11945		PDS2, ATHST	PHYTOENE DESATURATION 2, homog...		Lus10029321 [exp]	3.3	0.8290
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Lus10015320 [exp]	4.6	0.8058
AT3G04870		SPC1, PDE181, Z...	SPONTANEOUS CELL DEATH 1, PIGM...		Lus10015935 [exp]	7.6	0.8561
AT3G61780		EMB1703	embryo defective 1703 (.1)		Lus10004004 [exp]	8.1	0.8445
AT3G23940			dehydratase family (.1.2)		Lus10032616 [exp]	8.5	0.7997
AT4G30950		FADC, SFD4, FAD...	STEAROYL DESATURASE DEFICIENCY...		Lus10036613 [exp]	9.2	0.8530
AT1G78270		ATUGT85A4	UDP-glucosyl transferase 85A4 ...		Lus10036969 [exp]	11.5	0.8077
AT5G24300		SSI1, SSI, ATSS...	STARCH SYNTHASE 1, Glycogen/st...		Lus10018116 [exp]	12.5	0.8279

Compare expression of checked genes

Lus10020774 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.