Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03100 955 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G17616 228 / 1e-65 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G69290 209 / 2e-58 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G68980 184 / 4e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09650 140 / 2e-34 CRM3, HCF152 HIGH CHLOROPHYLL FLUORESCENCE 152, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G04810 78 / 1e-14 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G12775 78 / 1e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G02860 77 / 3e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 77 / 3e-14 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63330 76 / 4e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007353 [exp] 1311 / 0 AT1G03100 1003 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037275 [exp] 250 / 2e-73 AT4G17616 560 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037077 [exp] 201 / 2e-55 AT1G69290 827 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015059 [exp] 134 / 1e-32 AT3G09650 969 / 0.0 HIGH CHLOROPHYLL FLUORESCENCE 152, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036908 [exp] 109 / 3e-25 AT1G69290 365 / 1e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035686 [exp] 75 / 2e-14 AT4G17616 176 / 2e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023168 [exp] 74 / 3e-14 AT3G09650 314 / 1e-102 HIGH CHLOROPHYLL FLUORESCENCE 152, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 74 / 2e-13 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043434 [exp] 74 / 3e-13 AT5G04810 1108 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G212400 [exp] 1041 / 0 AT1G03100 1044 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G084400 [exp] 268 / 8e-80 AT4G17616 676 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G095800 [exp] 212 / 1e-59 AT1G69290 860 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G085300 [exp] 127 / 3e-30 AT3G09650 961 / 0.0 HIGH CHLOROPHYLL FLUORESCENCE 152, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G017400 [exp] 79 / 4e-15 AT5G04810 1278 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.010G241300 [exp] 79 / 5e-15 AT5G04810 1230 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.010G217600 [exp] 79 / 6e-15 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G205600 [exp] 77 / 2e-14 AT2G17140 1150 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G121700 [exp] 73 / 4e-13 AT4G19890 923 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G148700 [exp] 73 / 5e-13 AT3G48810 728 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10020775 pacid=23140805 polypeptide=Lus10020775 locus=Lus10020775.g ID=Lus10020775.BGIv1.0 annot-version=v1.0 ATGCAGATGGAAGGATTCCCTAGGAAGTCAGTCTTGAGTAAGCTCTTAACCAGCTTTGCAGAAAGCCTTGATCTCCAGTGGATCGCTAGGGCGTATGACT TGATTGAACAGGCAATTGCAGAGAGTAAGCAGACCTTACTGGAGAAGGAGCCTTTGATTTATCTCTCTCTGAGCCTTGCCAAATGTGGCTCTCCAGTTGC TGCTTCGACTTTAATTAGGAAGTTGATTGAGATGGAACAGTATCCTCCCGTCAGTGCTTGGTCTGCAGTAATTGCTCACATGTCGTTAACCCCTCCGGCT GGAGCTTATCTTGCTGCTGAGCTGATACTTGAGATAGGCTACCTGTTTCAGGACAATAGGATTGATCCACGGAAGAAGAGCAATGCGCCTTTAATTGCTA TGAGGCCTGATACTACTTCTTTCAACATTGCTTTAGCTGGATGTTTCCTGTCTGGGACGACGAGGAAGGGTGAGCAGCTTCTTGATATGATGCCTCGTAT TGGCGTTAGAGTCGACACGAGTTTGTTGATCACAATGACGCATATATACGAGAAGAATGGGAGAAGGGAAGAACTGAGGAAGCTTCAGAGGCATGTAGAC GAAGCCCCTAATTTAACTGATGTTCAATTTCGTCAGTTCAACAATTGTTTGCTGAATTGCCACTTAAAATTTGGAGATCTTGAGTCTGCTTCTGACATGG TGTTGAAGATGCTGCAGAAAGCAAAGCAAGCACAAAACTCTCTTGCCATGGCTACATTCAGTTTCTCTGGTGATAATAATAACTCACCCTCCAGTGGTCA GTGTTCTCAGGAAAGCTCGAATAATAAGGAATTGGATGATGAAGGAAATGTCAGGTCATGCCTAAACACCATCATTTCTTACCAAGATTTCAGTAGGGAT AGGTTCTTCCTGAAACTTCAAGCCGAGGCAAAAGAAGTGCTTGAAACTTTGTTAGAGAAATTGCAGATGCAGGTGGAATTGGTTACAACTGAGCATGGTA TTCTTCAGCCAACAGGGAAGATTTATGTGAAACTGGTTAAGGCGTTTCTTGAAGCTGGAAAGACGAAAGAATTGGCTACATTTCTTATCAAAGCTGAGAA AGAAGACTCCCCTGCTTCAAACGATGATTCAGCAATAGTTGAGGTTATCAACTTGTGCATTTCTCTTGGTTGGCTAGACCAGGCGCATGACCTCCTCGAC GAAATGCTTATGAACGGGTTTCGAGCTTCTTCTTCTGTGTATGCATCCCTCTTGAAGGCATACTGCAAAGCAAATCGAGCCCGCGATGCCAAGGCCCTTC TTCAAGAAGCTCGTAGAGCAGGGGTCCAGCTCGATTCCAGCAGTTATGAAGCATTGATGGCGTCCCAAGTGCTTGAGAAGGACACGCAAGGAGCACTCCA CCTATTCAAAGAGATGAAAGATGCCAAGCTACCAAGAGGCGGCCATCAGAAATTCGAGATGCTCGTTCAAGGCTGTGCGGAGAATCGCGAAGCAGGGTTA ATGGCAAATCTCTTGCGCGAAATTCACGAGGGACAGACCGTGGATTCCGGAGTTCACGATTGGAACAACGTGATCCATTTCTTCTCCAAGAAGAGGCTGA TGAACGACGCGGAGAAAGCCCTGAAGAAGATGAGAAGTCTCGGGTATACACCCAATGCGGAGACTTTCCACTCGATGGTGACTGGGTATGCTGCCGTTGG AGGGAAGTACATAGAAGTGACTGAGCTATGGGGGGAGATGAAGTCCATTGCTTCGGCAACTTCGTCGATGAAGTTCGACCAGGAGCTTCTGGACTCTGTA CTGTATACATTTGTGAGAGGAGGGTTTTTCACTAGAGCAAATGAAGTTGTGGATGTGATGGAGAAAGGGAAGATGTTTATAGACAAGTACAAGTATAGAA CTCTCTTCTTGAAGTACCATAAGACGATCTACAAGGGGAAGGCTCCCAAGTTTCAGACGGAGTCGCAGATGAACAAGAGAGACGCAGCATTGTCGTTCAA GAAGTGGTTAGGCCTTGGTTGA
AA sequence Show only first row Show all	>Lus10020775 pacid=23140805 polypeptide=Lus10020775 locus=Lus10020775.g ID=Lus10020775.BGIv1.0 annot-version=v1.0 MQMEGFPRKSVLSKLLTSFAESLDLQWIARAYDLIEQAIAESKQTLLEKEPLIYLSLSLAKCGSPVAASTLIRKLIEMEQYPPVSAWSAVIAHMSLTPPA GAYLAAELILEIGYLFQDNRIDPRKKSNAPLIAMRPDTTSFNIALAGCFLSGTTRKGEQLLDMMPRIGVRVDTSLLITMTHIYEKNGRREELRKLQRHVD EAPNLTDVQFRQFNNCLLNCHLKFGDLESASDMVLKMLQKAKQAQNSLAMATFSFSGDNNNSPSSGQCSQESSNNKELDDEGNVRSCLNTIISYQDFSRD RFFLKLQAEAKEVLETLLEKLQMQVELVTTEHGILQPTGKIYVKLVKAFLEAGKTKELATFLIKAEKEDSPASNDDSAIVEVINLCISLGWLDQAHDLLD EMLMNGFRASSSVYASLLKAYCKANRARDAKALLQEARRAGVQLDSSSYEALMASQVLEKDTQGALHLFKEMKDAKLPRGGHQKFEMLVQGCAENREAGL MANLLREIHEGQTVDSGVHDWNNVIHFFSKKRLMNDAEKALKKMRSLGYTPNAETFHSMVTGYAAVGGKYIEVTELWGEMKSIASATSSMKFDQELLDSV LYTFVRGGFFTRANEVVDVMEKGKMFIDKYKYRTLFLKYHKTIYKGKAPKFQTESQMNKRDAALSFKKWLGLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03100			Pentatricopeptide repeat (PPR)...		Lus10020775 [exp]	0	1
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10020996 [exp]	1.7	0.8886
AT1G31840			Tetratricopeptide repeat (TPR)...		Lus10009465 [exp]	2.4	0.8858
AT5G66820			unknown protein		Lus10009344 [exp]	2.4	0.8677
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Lus10029414 [exp]	6.2	0.8331
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10000091 [exp]	7.9	0.8433
AT2G31240			Tetratricopeptide repeat (TPR)...		Lus10003563 [exp]	8.4	0.8523
AT4G02820			Pentatricopeptide repeat (PPR)...		Lus10042574 [exp]	8.5	0.8367
AT3G61360			Tetratricopeptide repeat (TPR)...		Lus10001784 [exp]	10.7	0.8236
AT1G71350			eukaryotic translation initiat...		Lus10034314 [exp]	15.2	0.8055
AT1G24265			Protein of unknown function (D...		Lus10003127 [exp]	16.4	0.8304

Compare expression of checked genes

Lus10020775 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.