Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78570 955 / 0 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) AT3G14790 929 / 0 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1) AT1G53500 921 / 0 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1) AT1G63000 311 / 2e-101 UER1, NRS/ER "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) AT4G20460 119 / 9e-29 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G28760 109 / 5e-26 UXS6 UDP-XYL synthase 6 (.1.2.3) AT2G47650 110 / 1e-25 UXS4 UDP-xylose synthase 4 (.1.2) AT3G46440 108 / 1e-25 UXS5 UDP-XYL synthase 5 (.1.2) AT5G59290 108 / 1e-25 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT3G62830 109 / 3e-25 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007355 [exp] 1208 / 0 AT1G78570 982 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10010942 [exp] 981 / 0 AT1G78570 1130 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10038146 [exp] 947 / 0 AT1G78570 1228 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10042497 [exp] 947 / 0 AT1G78570 1227 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10005560 [exp] 843 / 0 AT1G78570 1123 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10013695 [exp] 729 / 0 AT1G78570 1005 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10014147 [exp] 313 / 3e-102 AT1G63000 530 / 0.0 "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) Lus10006719 [exp] 311 / 1e-101 AT1G63000 531 / 0.0 "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) Lus10038423 [exp] 114 / 5e-27 AT1G30620 682 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G103700 [exp] 952 / 0 AT1G78570 1211 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.001G383500 [exp] 947 / 0 AT1G78570 1190 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.006G272700 [exp] 866 / 0 AT1G78570 1078 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.001G112000 [exp] 305 / 4e-99 AT1G63000 535 / 0.0 "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) Potri.003G120000 [exp] 303 / 1e-98 AT1G63000 532 / 0.0 "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) Potri.001G237200 [exp] 109 / 6e-26 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2) Potri.002G204400 [exp] 110 / 1e-25 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.008G053100 [exp] 108 / 2e-25 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.010G207200 [exp] 108 / 2e-25 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.011G156100 [exp] 108 / 4e-25 AT1G30620 712 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10020776 pacid=23140796 polypeptide=Lus10020776 locus=Lus10020776.g ID=Lus10020776.BGIv1.0 annot-version=v1.0 ATGGCTACATACAAACCAAAGAACATCCTAATAACAGGAGCAGCAGGATTCATAGCGTCCCACGTATGCAACAGGCTAATCAGGAACCACCCGGGTTACA ATGTCGTCGTCCTCGACAAGCTCGACTACTGCTCGAACCTCAACAACCTCAACCCTGCACGATCTTCCCCGAACTTCAAATTCGTCAAGGGAGACATTGC GAGCGCCGACATGGTCAACTTCATCCTGTTGACCGAGTCGATCGACACCATCATGCATTTTGCGGCGCAAACCCACGTGGACAATTCGTTTGGAAACAGC TTCGAGTTCACCAATAACAACATCTATGGCACGCATGTGCTGTTGGAGGCTTGTAAGCTGACTCAGGGACAGGTTAAGAGGTTCATCCACGTCAGTACAT ACGAGGTTTATGGAGAGACCGATGAGGATGCTGTGGTGGGTAACCATGAGGCTTCTCAGTTGTTGCCGACGAACCCTTATTCGGCCACGAAAGCTGCTGC GGAGATGCTTGTCATGGCGTACGGGAGGTCGTACGGTCTGCCTGTGATCACGACTCGAGGTAACAATGTGTATGGACCTAATCAGTTTCCAGAGAAGTTG ATTCCTAAGTTCATTTTGTTGGCCATGATGGGAAAGCCTCTATCGATTCACGGAGACGGGTCGAATGTTCGGAGTTATTTGTACTGTGACGATGTCGCTG AGGCATTCGAGGTTGTGTTACACAAGGGCGAGGTTGGACATGTGTACAACATTGGTACTGAGAAAGAAAGGAGGGTTCTTGATGTGGCTAGTGACATTTG CAAGATGTTTGATTTGAACCCTAATGAACAAATCAAGTTTGTGGAGAATAGGCCCTTTAATGACCAGAGGTATTACTTGGATGATCAAAAGCTCAAGACT TTGGGATGGTGTGAGAGGACTACATGGGAAGAAGGGCTTAAGAAGACCATGGAATGGTACACTACACATCCCGGGTTTTGGGGCGACGTGTCCGGTGCAT TGCTTCCTCATCCGAGAATGCTCATGGCTACCGGAATGGATCGGAGTAATAATGTCGATCCACGAGAGATAGGGAACAATGTGATGAGTACTCCGGAAAA GTCTTTACTGAAGTTCTTGATCTACGGGAAAACTGGCTGGATAGCGAGTCTGCTTGGGAAAGCGTGCGAAAAGCAAGGTATTGCATACGAATTTGGGAAG GGAAGGTTGGAAATTAGGTTCCAGATTTCGAAAGATATATCAGAAATAAAGCCGACTCATGTGTTCAACATTTTCGAAACCAACAAGACTGATCAGACTA TTCGAGCCAATCCCATCGCCAGTGTCTTAACCTTGGCGGATGTATGCAAAGAGAATGACCTCATGATGATGAACTATGCATCCGGGAGCATACTTGAGTA TGGTGATTCACATGGTGCAATGGTTGAGGAAATCTTAAGAGAATATGACAATGTCTGCAACCTCATAGTTCACACACCGATCTCATCGGATCTAACCAAT CCACGCAACTTCATGGCCAAGATTTCGAGGTACGACAAGGTGGCGAACGTCCCAAACAGCATGACAGTACTCGACGAGCTTCTACCGATCTCGATCGAGA TGGCGAAGAGGAACCTGAGAGGTGTGTGGGACTTCACAAATCCCGAAGTCGTAACCCACAACGAGCTTCTCGAGATGTACCGTAAGTACATCGATCCGGA GTTCAAATGGACCAATTTCACAGCAGAAGAACAGACCAAGATCTCGGCGGTGGCTGCCGCCGGAAGTAATAACAATGCTCTGGATTGTTCCGAGCTCAAG AGTGAGTTCCCTGAAATTCTGTCCATCAAAGAGTCCCTGGTTAAGTATGTATTCGAACCCAACAAGAAGTCCTATTAG
AA sequence Show only first row Show all	>Lus10020776 pacid=23140796 polypeptide=Lus10020776 locus=Lus10020776.g ID=Lus10020776.BGIv1.0 annot-version=v1.0 MATYKPKNILITGAAGFIASHVCNRLIRNHPGYNVVVLDKLDYCSNLNNLNPARSSPNFKFVKGDIASADMVNFILLTESIDTIMHFAAQTHVDNSFGNS FEFTNNNIYGTHVLLEACKLTQGQVKRFIHVSTYEVYGETDEDAVVGNHEASQLLPTNPYSATKAAAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKL IPKFILLAMMGKPLSIHGDGSNVRSYLYCDDVAEAFEVVLHKGEVGHVYNIGTEKERRVLDVASDICKMFDLNPNEQIKFVENRPFNDQRYYLDDQKLKT LGWCERTTWEEGLKKTMEWYTTHPGFWGDVSGALLPHPRMLMATGMDRSNNVDPREIGNNVMSTPEKSLLKFLIYGKTGWIASLLGKACEKQGIAYEFGK GRLEIRFQISKDISEIKPTHVFNIFETNKTDQTIRANPIASVLTLADVCKENDLMMMNYASGSILEYGDSHGAMVEEILREYDNVCNLIVHTPISSDLTN PRNFMAKISRYDKVANVPNSMTVLDELLPISIEMAKRNLRGVWDFTNPEVVTHNELLEMYRKYIDPEFKWTNFTAEEQTKISAVAAAGSNNNALDCSELK SEFPEILSIKESLVKYVFEPNKKSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10020776 [exp]	0	1
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10040923 [exp]	3.2	0.8252
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10042640 [exp]	12.6	0.7766
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10019195 [exp]	19.3	0.7665
					Lus10023556 [exp]	21.0	0.7647
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10002301 [exp]	21.2	0.7480
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10027771 [exp]	23.8	0.7653
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10004828 [exp]	27.7	0.7339
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10036832 [exp]	29.7	0.7633
AT1G01180			S-adenosyl-L-methionine-depend...		Lus10013195 [exp]	32.3	0.7634
					Lus10030912 [exp]	33.5	0.7581

Compare expression of checked genes

Lus10020776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.