Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00231 392 / 2e-132 MEE50 maternal effect embryo arrest 50, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007356 [exp] 851 / 0 AT4G00231 416 / 7e-142 maternal effect embryo arrest 50, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G074900 [exp] 462 / 9e-160 AT4G00231 435 / 3e-149 maternal effect embryo arrest 50, ARM repeat superfamily protein (.1) Potri.008G158901 [exp] 175 / 3e-52 AT4G00231 154 / 4e-45 maternal effect embryo arrest 50, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF09759 [flax] [poplar] Atx10homo_assoc Spinocerebellar ataxia type 10 protein domain
Representative CDS sequence Show only first row Show all	>Lus10020777 pacid=23140905 polypeptide=Lus10020777 locus=Lus10020777.g ID=Lus10020777.BGIv1.0 annot-version=v1.0 ATGTGCAACGAAACAATGGTGGAATCCTCATCACAGCATCAACTTTTACTGCCGTTGTTGGCAGCTGCTAATTCCAGTGATCCTAAAGAAGCCTTGGAGG TTCTTGTATCCGCCGCACGGTCGGATGAAGGCCGCTCTTCCCTAGCTTCTATGAATGTTCTCCCTGACGTTCTCCGGTTCGTCGAATCCATCCCTGATCG TGAATATCTCCTTCCATCTCTTAGACTCTTGAGAAACTTGTGCGCTGGCGAAGCTTCCAATCAGAACTCTTTCCTCCAGGTTAATGGCGTCGCCATTATT TCCACGGTTCTGATCTCTGCGGAGCTGCTGCACGATGATCCTGATTGTGTTGTCATTCGAACCGGGCTGCAAGTTTTGGCAAACGTCTCTCTGGCAGGAA TCCAACATCAGCTAGCTATTTGGGCTGAATTCTTCCCTGATATGTTTATCGCCATCGGAAGAGTTTGGAGACTGGAGATTTGTGACCCTTTGTGTATGAT CCTTTACACTTGTTGTGATGGAACTGATGGCCTTTTTGGACAACTCCATGGAGAGGAAGGATTCCCTGTTCTGGCAGAAATCTTTAGGACTGCTTCTTCA GTTGGTTTTCAGGAAGAGTGGTTTAAGCTAGTTGTGTCCAGGCTATGCCTTGATGAAAATCTCTTCCATTCATTATTTCCAAGATTGCATAACCTCGACG ATAGTAAAGGCAAGGCCGTTGTTGTGGAGAGTGGCATTAATTTCTCGACCGAGCAAGCTTATCTTTTGCGGATTGTGTCGGACATCTTGAGCGAGAGGGT GAAGGAAGTTACAGTCTCGAGCGAGTTTGCACTCTGTGTTCTCCGAATATTCAAGGACTCCACTACTGTTCTCCTCGATGGACAAGTTTCACGAGAGAAA TCCAGTCTCCCAACGGGGTCTACTTCGATCGATGTTCTCGGATACTCGGTCAACATTTTGAAACATGTATGTGCCATAGGGTTTGAGGATGATATACAAG ATGTTGTCTCTGTGCTCTTGTGCAATGGACTTCTGGATATGCTTTTTGCCATTCTTAGAGACCTCGAACCTCCCACGACCATTAAGAAAGCCATGAGAGG AGCAGAAAGTGATGAAGCGGGTACGTCCTACTCCAGCAAGCCCTGTCCCTACGTTGGTTTCCGGAGGGACATTGTCGGAGTGATTGGTAACTGCGCGTTT AAAAGGAAGTCGGTGCAGGACAAGATTAGGCGGGATAACGGGATTTTACTTTTGTTGCAGCAATGTGTTACGGATGATGATAACCCCTTTTTAAGGGAGT GGGGGATATGGTCTGTGAGGAACTTGTTGGAAGGGAATGCTGAGAACCAGGAGGTAGTTGCTGGATTGAAGATTCAAGGGACTGTTCAGATGCCCGAGCT TGAAGGACTCGGTCTGAAAGTGGAAGTGGATCCAATGTCTGGACGAGCAAGGCTTGTGAACACGGCTCCTCCGTCGAATCCCAGCTTGAGCAGTGATATG AACTGA
AA sequence Show only first row Show all	>Lus10020777 pacid=23140905 polypeptide=Lus10020777 locus=Lus10020777.g ID=Lus10020777.BGIv1.0 annot-version=v1.0 MCNETMVESSSQHQLLLPLLAAANSSDPKEALEVLVSAARSDEGRSSLASMNVLPDVLRFVESIPDREYLLPSLRLLRNLCAGEASNQNSFLQVNGVAII STVLISAELLHDDPDCVVIRTGLQVLANVSLAGIQHQLAIWAEFFPDMFIAIGRVWRLEICDPLCMILYTCCDGTDGLFGQLHGEEGFPVLAEIFRTASS VGFQEEWFKLVVSRLCLDENLFHSLFPRLHNLDDSKGKAVVVESGINFSTEQAYLLRIVSDILSERVKEVTVSSEFALCVLRIFKDSTTVLLDGQVSREK SSLPTGSTSIDVLGYSVNILKHVCAIGFEDDIQDVVSVLLCNGLLDMLFAILRDLEPPTTIKKAMRGAESDEAGTSYSSKPCPYVGFRRDIVGVIGNCAF KRKSVQDKIRRDNGILLLLQQCVTDDDNPFLREWGIWSVRNLLEGNAENQEVVAGLKIQGTVQMPELEGLGLKVEVDPMSGRARLVNTAPPSNPSLSSDM N

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00231		MEE50	maternal effect embryo arrest ...		Lus10020777 [exp]	0	1
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10030449 [exp]	5.5	0.8019
AT4G00231		MEE50	maternal effect embryo arrest ...		Lus10007356 [exp]	6.2	0.8208
AT1G21710		OGG1, ATOGG1	ARABIDOPSIS 8-OXOGUANINE-DNA G...		Lus10028539 [exp]	12.0	0.7796
AT4G02720			unknown protein		Lus10022052 [exp]	13.0	0.8136
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10032189 [exp]	13.1	0.8291
AT1G03540			Pentatricopeptide repeat (PPR-...		Lus10033713 [exp]	14.5	0.8018
AT3G09060			Pentatricopeptide repeat (PPR)...		Lus10030513 [exp]	15.5	0.7906
AT3G55700			UDP-Glycosyltransferase superf...		Lus10004671 [exp]	16.8	0.8086
AT5G19160		TBL11	TRICHOME BIREFRINGENCE-LIKE 11...		Lus10034041 [exp]	17.5	0.7928
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10026627 [exp]	18.7	0.8147

Compare expression of checked genes

Lus10020777 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.