Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66340 1192 / 0 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT2G40940 810 / 0 ERS1 ethylene response sensor 1 (.1) AT3G23150 435 / 8e-142 ETR2 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT3G04580 429 / 7e-140 EIN4 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) AT1G04310 306 / 6e-94 ERS2 ethylene response sensor 2 (.1) AT5G35750 142 / 8e-35 AHK2 histidine kinase 2 (.1) AT5G10720 127 / 6e-30 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) AT1G27320 124 / 5e-29 AHK3 histidine kinase 3 (.1) AT2G01830 122 / 3e-28 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT2G17820 119 / 2e-27 AHK1, ATHK1 histidine kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007357 [exp] 1434 / 0 AT1G66340 1211 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10031382 [exp] 1292 / 0 AT1G66340 1206 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10013415 [exp] 858 / 0 AT2G40940 907 / 0.0 ethylene response sensor 1 (.1) Lus10010310 [exp] 858 / 0 AT2G40940 904 / 0.0 ethylene response sensor 1 (.1) Lus10022203 [exp] 460 / 2e-151 AT3G23150 882 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10021212 [exp] 457 / 2e-150 AT3G23150 890 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10021880 [exp] 451 / 6e-148 AT3G23150 857 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10041159 [exp] 446 / 6e-146 AT3G23150 851 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10022009 [exp] 436 / 2e-142 AT3G04580 937 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G032300 [exp] 1248 / 0 AT1G66340 1228 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.001G204200 [exp] 1243 / 0 AT1G66340 1216 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.002G201500 [exp] 888 / 0 AT2G40940 897 / 0.0 ethylene response sensor 1 (.1) Potri.008G164400 [exp] 501 / 1e-167 AT3G23150 889 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.010G074300 [exp] 487 / 6e-162 AT3G23150 877 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.019G014300 [exp] 477 / 2e-158 AT3G04580 959 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Potri.013G044100 [exp] 472 / 3e-156 AT3G04580 960 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Potri.003G171000 [exp] 139 / 1e-33 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.001G057400 [exp] 130 / 5e-31 AT1G27320 1384 / 0.0 histidine kinase 3 (.1) Potri.008G137900 [exp] 121 / 5e-28 AT2G01830 1390 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0161 [flax] [poplar] GAF PF01590 [flax] [poplar] GAF GAF domain CL0025 [flax] [poplar] His_Kinase_A PF00512 [flax] [poplar] HisKA His Kinase A (phospho-acceptor) domain CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Lus10020778 pacid=23140871 polypeptide=Lus10020778 locus=Lus10020778.g ID=Lus10020778.BGIv1.0 annot-version=v1.0 ATGGAGTCTTGCAATTGTATTGAGCCACAGTTGCCCCCTGATGAGCTGCTGTCCAAGTACCAATACATTTCGGATTTCTTCATTGCTCTAGCGTATTTCT CCATCCCTTTGGAGCTGATCTACTTCGTGAAGAAATCCGCCGTCTTCCCTTACAGATGGGTTCTCGTGCAGTTTGGTGCTTTTATAGTTCTCTGTGGAGC TACTCACCTTATTAACTTATGGACTTTCACCATCCACTCCAGAACTGTTGCCATGGTAATGACCACTGCCAAGATTTTGACTGCCGTCGTTTCGTGTGCG ACTGCCCTTATGCTAGTCCACATTATTCCCGATCTTTTGAGTGTCAAGACCAGGGAGCTCTTTCTCAAGAACAAGGCTGCCGAGTTGGATAGAGAAATGG GGCTTATCCGTACTCAGGAAGAGACGGGCAGGCATGTTAGGATGTTGACTCATGAAATCAGAAGTACTCTTGACAGGCACACTATACTGAAGACTACTCT GGTTGAACTGGGACGGACTTTGTCGTTGGAAGAGTGTGCACTGTGGATGCCAACTCGTACTGGTTTGGAGCTCCAGCTTGCATATACTCTACGCCAGCAG AATCCTGTTGGATATACCGTACCGATCCATCTACCTGTAATTAATCAAGTATTTAGTGGTAACCGGGCTATTAAAATATCCCCTAACTCCCCAGTTGCTA GACTAAGGCCTATTGCTGGGAAGTACCCGGGAGAGGTTGTTGCTGTCCGGGTTCCACTCCTGCATCTTTCTAACTTCCAGATTAATGACTGGCCCGAGCT TTCGACTAAACGCTATGCTTTGATGGTTTTAATGCTGCCCTCGGATAGTGCAAGGCAGTGGCATGCCTATGAGTTAGAACTTGTTGAAGTAGTTGCTGAT CAGGTGGCTGTTGCTTTGTCACATGCTGCAATCTTAGAGGAGTCGATGAGGGCAAGGGATCTACTTATGGAGCAGAACGTTGCTCTAGATCTTGCTCGGA GAGAAGCAGAAACTGCCATTCGTGCTCGCAATGATTTCCTGGCGGTGATGAACCATGAGATGAGAACTCCTATGCATGCAATAATAGCTCTTTCGTCCCT TTTACAGGAAACTGAGCTGACACCAGAGCAGCGGCTGATGATTGAGACTATTTTGAAGAGTAGTAATCTCTTGGCTACTCTAATAAATGATGTACTAGAT CTGTCAAGGCTTGAAGATGGGAGCCTCCAGCTTGACCTTGGAAGTTTTAATCTTCATACTGTTTTCAAAGAGGTTATCAACTTGATTAGGCCTATTGCAT CTGTCAAGAAATTGCTGGTTTCCTTGCACTTGGCTCAAGATCTGCCTGAATATGCCATTGGTGATGAAAAACGGCTTATGCAAACTCTCCTTAATGTTGT TGGGAATGGGGTCAAGTTCTCGAAAGAAGGTAGCATCTCAATAACTGCTTTTGTTGCAAAGGCAGAATCTTTAAGGGATCCTCGAGCTCCCGATTTCTTC CCTGTCCCAAGTGATAATCACTTCTATTTGCGTGTACAGGTAAAGGATACCGGGTCAGGAATAAACCCACAAGATTTTCCCAAGTTGTTTACTAAATTTG CAGAAGCTGAGTCTTTAGCAAACAAAAACTCTGGTGGCAGTGGACTTGGCCTTGCGATTTGTAAGAGGTACACTGTGCTTGTGATCAGGTTTGTGAACCT TATGGATGGACATATTTGGCTTGAAAGCGATGGTTTGGGTAAAGGATGCACTGCAATCTTTATGGTCAGACTTGGGATAGCAGAACGCTCTAATGAGTCT AAGCTTTCTGCTGCAACTAAAACAACATCATTATACCATGCACAGACTGCCTTTCCTGGACTCAAAGTTATAGTGATGGATGCTAATGGAGTTAGCAGGA TGGCAACTAGAGGACTTCTTGTACACCTGGGATGTGAGGTGACAACTGTAAGCTCCGGCGATGAGTGCTTGCGCTCAATCTCTCAGGACCACCGCATGGT ATTCATAGACGTGTCTATGCATGACGGTTACGAAGTTGCTCTTCGTATCCACGAAATGTTCACGAAGCATAGACCTTTAATGGTGGCCCTCACATCTAAC GCCGAGAAAGTGACCAATGACCAATGCCGGAGAGCTGGCGTGGATGGCATTGTACAGAAACCCGTCTCTGTTGAAAAAATGCGGTGCGTCTTGTCTGACC TTTTGGAACACCGGATTCTGCACCTATAA
AA sequence Show only first row Show all	>Lus10020778 pacid=23140871 polypeptide=Lus10020778 locus=Lus10020778.g ID=Lus10020778.BGIv1.0 annot-version=v1.0 MESCNCIEPQLPPDELLSKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFTIHSRTVAMVMTTAKILTAVVSCA TALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLSLEECALWMPTRTGLELQLAYTLRQQ NPVGYTVPIHLPVINQVFSGNRAIKISPNSPVARLRPIAGKYPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHAYELELVEVVAD QVAVALSHAAILEESMRARDLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMIETILKSSNLLATLINDVLD LSRLEDGSLQLDLGSFNLHTVFKEVINLIRPIASVKKLLVSLHLAQDLPEYAIGDEKRLMQTLLNVVGNGVKFSKEGSISITAFVAKAESLRDPRAPDFF PVPSDNHFYLRVQVKDTGSGINPQDFPKLFTKFAEAESLANKNSGGSGLGLAICKRYTVLVIRFVNLMDGHIWLESDGLGKGCTAIFMVRLGIAERSNES KLSAATKTTSLYHAQTAFPGLKVIVMDANGVSRMATRGLLVHLGCEVTTVSSGDECLRSISQDHRMVFIDVSMHDGYEVALRIHEMFTKHRPLMVALTSN AEKVTNDQCRRAGVDGIVQKPVSVEKMRCVLSDLLEHRILHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Lus10020778 [exp]	0	1
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Lus10007357 [exp]	1.0	0.9100
AT3G46450			SEC14 cytosolic factor family ...		Lus10004953 [exp]	4.5	0.7979
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10016980 [exp]	6.5	0.7957
AT2G22740		SDG23, SUVH6	SET DOMAIN PROTEIN 23, SU(VAR)...		Lus10011049 [exp]	6.5	0.8220
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10038995 [exp]	7.7	0.7616
AT2G31820			Ankyrin repeat family protein ...		Lus10027074 [exp]	7.7	0.8100
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10018178 [exp]	12.5	0.8023
AT4G03000			RING/U-box superfamily protein...		Lus10021953 [exp]	15.5	0.7741
AT2G31820			Ankyrin repeat family protein ...		Lus10027075 [exp]	21.0	0.7818
AT4G03000			RING/U-box superfamily protein...		Lus10041245 [exp]	21.4	0.7786

Compare expression of checked genes

Lus10020778 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.