Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01750 76 / 5e-17 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT3G11740 68 / 2e-14 Protein of unknown function (DUF567) (.1) AT2G14560 62 / 6e-12 LURP1 LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA, Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT3G16900 61 / 1e-11 Protein of unknown function (DUF567) (.1) AT1G33840 56 / 1e-09 Protein of unknown function (DUF567) (.1) AT3G56180 53 / 1e-08 Protein of unknown function (DUF567) (.1) AT3G10986 43 / 3e-05 Protein of unknown function (DUF567) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007360 [exp] 308 / 5e-108 AT5G01750 100 / 9e-26 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10002477 [exp] 59 / 9e-11 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10001255 [exp] 59 / 9e-11 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10022754 [exp] 59 / 1e-10 AT5G01750 214 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10014021 [exp] 59 / 1e-10 AT5G01750 202 / 6e-66 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10014154 [exp] 58 / 2e-10 AT5G01750 206 / 2e-67 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10025254 [exp] 54 / 4e-09 AT5G01750 166 / 1e-51 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10009092 [exp] 54 / 5e-09 AT5G01750 161 / 7e-50 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10025253 [exp] 54 / 8e-09 AT5G01750 169 / 4e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G131850 [exp] 67 / 6e-14 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.008G075100 [exp] 67 / 6e-14 AT3G56180 177 / 2e-56 Protein of unknown function (DUF567) (.1) Potri.010G182300 [exp] 67 / 6e-14 AT3G56180 201 / 5e-66 Protein of unknown function (DUF567) (.1) Potri.016G130500 [exp] 66 / 1e-13 AT5G01750 218 / 6e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131800 [exp] 65 / 6e-13 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130700 [exp] 64 / 1e-12 AT5G01750 209 / 2e-68 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131701 [exp] 63 / 3e-12 AT5G01750 201 / 2e-65 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131100 [exp] 62 / 3e-12 AT5G01750 154 / 3e-47 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131400 [exp] 59 / 7e-11 AT5G01750 147 / 3e-44 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131600 [exp] 59 / 8e-11 AT5G01750 128 / 4e-37 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF04525 [flax] [poplar] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Lus10020780 pacid=23140900 polypeptide=Lus10020780 locus=Lus10020780.g ID=Lus10020780.BGIv1.0 annot-version=v1.0 ATGGCCGGCACCGTAGTTAGCCCTTTGTACTGTAGTTCTACAGCAGTGGACATGGAGATATCGAACAAGGATTACCGGCTCATCACTGTTACTGATCATC TGGTTCGCGGAGGATCAATCCAGTTTAAGGCGAATTACAAGTGGCAGGCGTTCAGAGGAGAAAGCACAGAGGCGAATGACTTAATATTCTCTTCAAAAAC TGAGTTTCCTGTGAGAGATAAGAAGACTAGAGCACTCCCAGTTATGGAGGTTTTTCTGGGAAACTTCACAAAAGATAAGGTGGATTGTGATTTCAAGGTC CAGGGGAACTTGTCCAAGACTAGTTTTGCTGTTCAGGCAGCTGGAAGTGGAGATTCAGCAGGGGCCATAGTGGCACAGCAGATAGATACGATTGATGATG AAGGTAAACAGAAATCGGTGGTGAGGGTGTATCCAAACATCGATCAAGCATTCATGGTGGCCCTCATTGTTATCATGGATACCACAAATCGTGCAGCTGG GTCGGATGATGCCCTCGCCGCCAGTGGCATGCTCATGACTGCAATCTAA
AA sequence Show only first row Show all	>Lus10020780 pacid=23140900 polypeptide=Lus10020780 locus=Lus10020780.g ID=Lus10020780.BGIv1.0 annot-version=v1.0 MAGTVVSPLYCSSTAVDMEISNKDYRLITVTDHLVRGGSIQFKANYKWQAFRGESTEANDLIFSSKTEFPVRDKKTRALPVMEVFLGNFTKDKVDCDFKV QGNLSKTSFAVQAAGSGDSAGAIVAQQIDTIDDEGKQKSVVRVYPNIDQAFMVALIVIMDTTNRAAGSDDALAASGMLMTAI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01750			Protein of unknown function (D...		Lus10020780 [exp]	0	1
					Lus10000761 [exp]	4.2	0.6094
AT5G25120		CYP71B11	"ytochrome p450, family 71, su...		Lus10023709 [exp]	23.5	0.6062
AT1G71150			unknown protein		Lus10021799 [exp]	23.8	0.5939
AT3G24730			mRNA splicing factor, thioredo...		Lus10011878 [exp]	26.5	0.5814
AT4G23310		CRK23	cysteine-rich RLK (RECEPTOR-li...		Lus10015095 [exp]	32.0	0.5630
AT1G70870			Polyketide cyclase/dehydrase a...		Lus10008931 [exp]	36.8	0.5947
AT1G69210			Uncharacterised protein family...		Lus10014566 [exp]	54.3	0.5569
AT5G01580		OSH1	OAS HIGH ACCUMULATION 1, gamma...		Lus10002203 [exp]	80.1	0.5300
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10019927 [exp]	85.9	0.5479
AT1G51650			ATP synthase epsilon chain, mi...		Lus10034841 [exp]	115.7	0.5396

Compare expression of checked genes

Lus10020780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.