Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25660 750 / 0 Amidase family protein (.1) AT5G64440 139 / 1e-34 ATFAAH fatty acid amide hydrolase (.1) AT5G07360 103 / 6e-23 Amidase family protein (.1.2) AT1G08980 79 / 2e-15 ATTOC64-I, ATAMI1 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) AT4G34880 79 / 3e-15 Amidase family protein (.1) AT5G09420 71 / 1e-12 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) AT3G17970 70 / 3e-12 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007361 [exp] 967 / 0 AT3G25660 795 / 0.0 Amidase family protein (.1) Lus10016685 [exp] 147 / 6e-37 AT5G64440 453 / 2e-152 fatty acid amide hydrolase (.1) Lus10007095 [exp] 140 / 2e-34 AT5G64440 776 / 0.0 fatty acid amide hydrolase (.1) Lus10020468 [exp] 137 / 8e-34 AT5G64440 781 / 0.0 fatty acid amide hydrolase (.1) Lus10007094 [exp] 136 / 2e-33 AT5G64440 795 / 0.0 fatty acid amide hydrolase (.1) Lus10027852 [exp] 120 / 3e-28 AT4G34880 489 / 3e-170 Amidase family protein (.1) Lus10032519 [exp] 107 / 3e-24 AT5G07360 847 / 0.0 Amidase family protein (.1.2) Lus10043019 [exp] 107 / 4e-24 AT5G07360 858 / 0.0 Amidase family protein (.1.2) Lus10025066 [exp] 100 / 8e-22 AT4G34880 484 / 3e-168 Amidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G086350 [exp] 767 / 0 AT3G25660 766 / 0.0 Amidase family protein (.1) Potri.007G098600 [exp] 158 / 6e-41 AT5G64440 478 / 2e-162 fatty acid amide hydrolase (.1) Potri.005G070300 [exp] 149 / 8e-38 AT5G64440 488 / 1e-166 fatty acid amide hydrolase (.1) Potri.001G285900 [exp] 137 / 5e-34 AT5G64440 769 / 0.0 fatty acid amide hydrolase (.1) Potri.009G130400 [exp] 122 / 3e-29 AT4G34880 489 / 1e-170 Amidase family protein (.1) Potri.004G169300 [exp] 120 / 2e-28 AT4G34880 493 / 7e-172 Amidase family protein (.1) Potri.015G109400 [exp] 110 / 6e-25 AT5G07360 823 / 0.0 Amidase family protein (.1.2) Potri.004G171300 [exp] 108 / 1e-24 AT4G34880 473 / 5e-164 Amidase family protein (.1) Potri.009G130500 [exp] 101 / 2e-22 AT4G34880 500 / 2e-174 Amidase family protein (.1) Potri.004G171000 [exp] 94 / 6e-20 AT4G34880 535 / 0.0 Amidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01425 [flax] [poplar] Amidase Amidase
Representative CDS sequence Show only first row Show all	>Lus10020781 pacid=23140825 polypeptide=Lus10020781 locus=Lus10020781.g ID=Lus10020781.BGIv1.0 annot-version=v1.0 ATGATGAGGGAAACCGCCGCCAAGGCCAAGCAGGTCTCATCCGGAAGCCCATGGTATGGCCCAGAGAGAGTTAAGTATTTGGGCTACGCGTGCGCGCACC ACCTCGTCGGCCGTGGGCCCCCCGGGCACAGCGGGGCGGGCGCCGACTCTAACTCGGCCAAAAAATATTCAGCTAAACTTGAGCATATTAAAGTTCGGTT TGATTACCGTGAACCGAGCTTAGTTAAATCCTCAGGCTCATCATCAGTCACTTTGGAAATCGGATTTCCGTTCCGGAGAAAAATGCTATCCACTCTGCAT CCCCCACGTTCACTCTCCCGCTTCCAACTCCACTTCACCTCCTCCGTCAAGCCCCGAGCTTTCGCCGCCGTCGCCGCTGCCTCTTCTCTCTCCGGCTTCC CTCCGCCGCTCACATCAACCCAATCCCCAGAAGGAGGTCCGGCCTCCCAAATCCTCTCAATACGTCAATCGCTTCTCTCCCGAGCCGTCACCGCCACCCA GCTCGCCGAGTCTTACTTGACCCGCCTCCGCCTCATCGAGCCGCAGCTTAATTCCTTCATCCATGTCTCCGATTCCGTGCTGAAAGCTGCGCAGGAGATC GATGCTAAGATCGATAGGGGCGAAGGGGAAGAACTGGGACCCCTCGCCGGAATTATGGTCGGCGTTAAGGATAATATATGTACCGCGGATATGCCGTCCA CCGGCGGCTCCCGCATTCTGGAGAATTACCGGCCTCCCTTTGATGCCACGGCGGTTAAGAGATTGAAGGAGAGTGGCGGGATTGTGGCGGGGAAGACTAA TATGGACGAGTTCGGTATGGGGAGTACCACTGAAGGTTCTGGCTTTCAGGTGACTGCAAACCCATGGGATGTGTCTCGTGTGCCCGGTGGATCATCAGGA GGGTCAGCGGCAGCTGTGTCAGCTAGGCAATGCGTAGTTTCGTTGGGAAGTGATACTGGTGGAAGTGTAAGACAGCCTGCATCATTTTGTGGTGTTGTTG GATTGAAGCCAACATATGGACGAGTCTCCAGATTTGGGCTTATGGCATATGCATCCTCACTGGATGTAATTGGGTGCTTTGGAACATCAGTGGCTGATGC TGGTATTCTTCTAAGTGCAATCGCTGGTCATGACAAGTTCGATGCTACTAGTAGTAAGCAAAAAGTCCCAGACTTTGAATCTCTTTTTGCTTCCATAAAT CTGTCGGAGTCTAAACCGTTAAGTGGACTGAAAGTGGGTCTTATACGTGAAACCCTTGATGATGGTGTGGACAGTGGAGTAAAGTCAGTGATAAACACTG CTGCTCTGCATATGGAAGAGTTGGGGTGCATCGTCTCTGAGGTTTCATTGCCTTCTTTCTCCCTTGGTTTACCTGCCTACTATATCCTTGCCTCATCTGA ATCATCTTCAAACTTGTCACGTTATGATGGTGTCAGGTATGGAAAGCAAGTTGTTGCTGATGAGTTGAATGGTCTTTATGGGGATTCGAGAGCGAACGGC TTTGGTCCTGAGGTCAAAATGAGAATTTTGATGGGAACATATGCCCTATCAGCTGGTTATTATGATGCTTACTACAAGCGTGCTCAACAGGTAAGGACAT TGATTCGAGAAAGCTTCGACGCAGCTTTAGAAAACAATGACATCCTAATTTCTCCCGCTGCTCCATCAGTAGCTTATAAGATGGGATCCACCATAAGCAG AAATGATCTGATTCTTGCAGGTGAGAAGAAAAACGACCCATTATCGATGTATGCTGGAGACATAATGACTGTAAATGTTAACCTGGCTGGTCTTCCAGCA CTGGTTGTTCCTTTTGGATTTGTCGAAGGAGGGCCTTCAGGGCTTCCGGTTGGTCTCCAAATGATCGGAGCAGCATTTCACGAGGAGAAATTGCTAAAAA TTGGACACATCTTTGAGCAGACCCTTCAAGGGTGCAGTTTTGTTCCGCCATTGGTTGCCGATAGGGTCGTGGGCTAA
AA sequence Show only first row Show all	>Lus10020781 pacid=23140825 polypeptide=Lus10020781 locus=Lus10020781.g ID=Lus10020781.BGIv1.0 annot-version=v1.0 MMRETAAKAKQVSSGSPWYGPERVKYLGYACAHHLVGRGPPGHSGAGADSNSAKKYSAKLEHIKVRFDYREPSLVKSSGSSSVTLEIGFPFRRKMLSTLH PPRSLSRFQLHFTSSVKPRAFAAVAAASSLSGFPPPLTSTQSPEGGPASQILSIRQSLLSRAVTATQLAESYLTRLRLIEPQLNSFIHVSDSVLKAAQEI DAKIDRGEGEELGPLAGIMVGVKDNICTADMPSTGGSRILENYRPPFDATAVKRLKESGGIVAGKTNMDEFGMGSTTEGSGFQVTANPWDVSRVPGGSSG GSAAAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRFGLMAYASSLDVIGCFGTSVADAGILLSAIAGHDKFDATSSKQKVPDFESLFASIN LSESKPLSGLKVGLIRETLDDGVDSGVKSVINTAALHMEELGCIVSEVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGKQVVADELNGLYGDSRANG FGPEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIRESFDAALENNDILISPAAPSVAYKMGSTISRNDLILAGEKKNDPLSMYAGDIMTVNVNLAGLPA LVVPFGFVEGGPSGLPVGLQMIGAAFHEEKLLKIGHIFEQTLQGCSFVPPLVADRVVG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25660			Amidase family protein (.1)		Lus10020781 [exp]	0	1
AT2G18710		SCY1	SECY homolog 1 (.1)		Lus10023202 [exp]	5.7	0.9087
AT5G17790		VAR3	VARIEGATED 3, zinc finger (Ran...		Lus10013630 [exp]	9.2	0.8686
AT3G53170			Tetratricopeptide repeat (TPR)...		Lus10024893 [exp]	9.6	0.8876
AT5G66055		EMB16, EMB2036,...	EMBRYO DEFECTIVE 2036, EMBRYO ...		Lus10028399 [exp]	10.3	0.8883
AT5G55740		CRR21	chlororespiratory reduction 21...		Lus10004751 [exp]	11.2	0.8800
AT5G16710		DHAR3	dehydroascorbate reductase 1 (...		Lus10028510 [exp]	14.0	0.8830
AT5G50280		EMB1006	embryo defective 1006, Pentatr...		Lus10042081 [exp]	16.1	0.8669
AT3G02450			cell division protein ftsH, pu...		Lus10034097 [exp]	16.7	0.8771
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10010385 [exp]	18.3	0.8825
AT4G29400			Protein of unknown function (D...		Lus10032701 [exp]	19.1	0.8618

Compare expression of checked genes

Lus10020781 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.