Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37010 123 / 2e-29 unknown protein AT1G65710 91 / 2e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007363 [exp] 646 / 0 AT5G37010 167 / 2e-44 unknown protein Lus10010952 [exp] 278 / 3e-85 AT1G65710 232 / 1e-67 unknown protein Lus10031372 [exp] 193 / 1e-55 AT5G37010 171 / 2e-47 unknown protein Lus10031373 [exp] 61 / 2e-10 AT1G65710 96 / 2e-23 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G145200 [exp] 212 / 1e-59 AT5G37010 212 / 3e-59 unknown protein Potri.015G147900 [exp] 139 / 2e-34 AT5G37010 195 / 3e-53 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020782 pacid=23140913 polypeptide=Lus10020782 locus=Lus10020782.g ID=Lus10020782.BGIv1.0 annot-version=v1.0 ATGGGGACTTGTTTCAGCAAGAAAAACGCCTCCTTTTCTTCTCCAGCTCCGGCAGCGAAAGATTCAGCTCCGGCAGAAACGGCGGCGAGGAAGGAGGAAG ATTCGAGCGCGAAGAAGAAGAAGGAGATATTCGTCATTAAGCACACCAACAGCCAGAGAGAGAGACATCATCAACCGGACGCTTCGGAATCCGTTGACGG CGTTACTGTTATTACGAAGGTGAGAACTTCTAGCCGCACCAAGGAAGAGGTGGACGCCATTCTTATCCAGTGTGGCAGGCTGAGCCGGAGCAACTCTTTT GGTACTCCAGGTAAGAAGTCGGCGGCGGCGAGGAGGAGGCGCAGTGGGTCGAAGAGTAGCTTCGATTTCGATGAGCAGCATTGCCGGGGAGAAGAAGAAG ATGGAGATTTAGGCGGCGATGAAGCGTCGGCGGTGGAGAGGGGGAGTAGAAGGCAGCAGCACCACCGCCGCCACAGCCAATCGAGCCGCAATTCGTCTCC GGCTGGGAGGAGGACGCCGAGTGGGGAAAGAGATCAGCAGCGATCCGGAAGCCGAGAGAGAGATAGTGGAACTGGACGGCGAGTTAGTATATCTCCTGGG AGGAGATCGGCGGGGACTTTGACCGCCGGGAATTGTAATGCTACTAATGCGACGAATAGACCGCCTGGGAAAATGGTCTCTGTTCCACCTACAGTGTCTT CCAACAAAGCTTCTGTTGAATCAGAAGCTCCACAGGCTGGAATTAGACGGATTTCTGTGCAGAGGAATGTTGGTGTAGGCTCGCCACGGTCACAGTCGCC TTCCGGAGTGAAGAACGACTGTAATCAGCAACCATCGCCGAGAAGAAGCTCGTCAAGGAAAGCAGAGCATTCTCCTTACAGGAGGAATCCGTTGGTCGAA ATCAGCTCGTATTCGGGGCCGTATCCGCAGTCGAATGGGGTGAAAATCGACAAAAACAATGTCGGAAATGATGGGCAGATGACCGGAAAGGAATCGATCC AGAAGCCAAATCCCTTCCAACAGACGGCATCCACGGCTCCAACTGAACAAATCATGAATCCATCGGAGCAACAACCGCGCCCCAGAAGCCGATCAGCAAG AAGATCTCGAGACCTGGACATGAATCCGGAATCTTTATTGATTCCACAACCGACCACATACACATCAATGCTGCTGCAAGACATCAACAACTTCCACCAC AAGAGTAATAATACCAACAACAACGTCAGCAGCAGGAACAACAATGACACCAAGAGCAACGTAGTACCGTCGTCATTCGAGCTACCAGATTGTGTGAAGA AAGCGTGCTCGATATTGGAAGCAGTTGCCGATCTCAATTCCACCACAAGCTCCGACTTGTCCTACGAAGAGAAGCAACATTGGAGGGTTCCAACGGCGAG AAAAGAAGACCCATTTCCAGTGGAATCTGAGGTGGTGGAAATGGATGATACAAGCTTCCGCTCGTATGTGACTGTAAGAAGGGGAAGCGGCGGGCTGTCT TGTAGTGGAGTAGAAGAGTCTTCAGGGAGCAACAGCTTTGTGCAAGAAAAAGGGCGAAGTTCGCATAATTCAGCCGATCCGAAGAAGAGTTTGAGATCGA ATGTGGTTCCGGTGGGATTGGGAATTGGGGAGAGAGTTCATGGATTGAGTGAAAGAGCTGGAGGAATTGGAACTGGAGGAACAATGGAACGGTTTAATGG TGGGCAGAGGAATGGGATTGGGCGAGGAAGGATGGTTGGTGATGGCAATAGAAGTCGTCAGCATCTCCTGACAGCTGCTGCTTCTTCAACGTAA
AA sequence Show only first row Show all	>Lus10020782 pacid=23140913 polypeptide=Lus10020782 locus=Lus10020782.g ID=Lus10020782.BGIv1.0 annot-version=v1.0 MGTCFSKKNASFSSPAPAAKDSAPAETAARKEEDSSAKKKKEIFVIKHTNSQRERHHQPDASESVDGVTVITKVRTSSRTKEEVDAILIQCGRLSRSNSF GTPGKKSAAARRRRSGSKSSFDFDEQHCRGEEEDGDLGGDEASAVERGSRRQQHHRRHSQSSRNSSPAGRRTPSGERDQQRSGSRERDSGTGRRVSISPG RRSAGTLTAGNCNATNATNRPPGKMVSVPPTVSSNKASVESEAPQAGIRRISVQRNVGVGSPRSQSPSGVKNDCNQQPSPRRSSSRKAEHSPYRRNPLVE ISSYSGPYPQSNGVKIDKNNVGNDGQMTGKESIQKPNPFQQTASTAPTEQIMNPSEQQPRPRSRSARRSRDLDMNPESLLIPQPTTYTSMLLQDINNFHH KSNNTNNNVSSRNNNDTKSNVVPSSFELPDCVKKACSILEAVADLNSTTSSDLSYEEKQHWRVPTARKEDPFPVESEVVEMDDTSFRSYVTVRRGSGGLS CSGVEESSGSNSFVQEKGRSSHNSADPKKSLRSNVVPVGLGIGERVHGLSERAGGIGTGGTMERFNGGQRNGIGRGRMVGDGNRSRQHLLTAAASST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37010			unknown protein		Lus10020782 [exp]	0	1
AT4G33400			Vacuolar import/degradation, V...		Lus10021729 [exp]	5.2	0.9500
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Lus10013199 [exp]	5.8	0.9417
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Lus10025559 [exp]	6.0	0.9246
AT1G05440			C-8 sterol isomerases (.1)		Lus10041200 [exp]	6.5	0.9321
AT5G05510			Mad3/BUB1 homology region 1 (....		Lus10040947 [exp]	7.1	0.9343
AT4G24710			P-loop containing nucleoside t...		Lus10019473 [exp]	7.9	0.9397
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10010483 [exp]	11.0	0.9344
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Lus10030714 [exp]	14.5	0.9327
AT1G76540		CDKB2;1	cyclin-dependent kinase B2;1 (...		Lus10040593 [exp]	15.3	0.9216
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10030746 [exp]	16.5	0.9306

Compare expression of checked genes

Lus10020782 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.