Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65690 220 / 7e-72 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G36970 220 / 8e-72 NHL25 NDR1/HIN1-like 25 (.1) AT1G54540 150 / 1e-44 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G27080 90 / 2e-21 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) AT5G21130 85 / 3e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G52470 67 / 2e-13 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G35960 67 / 3e-13 NHL12 NDR1/HIN1-like 12 (.1) AT5G53730 66 / 1e-12 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G11660 65 / 2e-12 NHL1 NDR1/HIN1-like 1 (.1) AT5G06320 64 / 7e-12 NHL3 NDR1/HIN1-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007364 [exp] 419 / 6e-150 AT1G65690 267 / 6e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10031888 [exp] 155 / 2e-46 AT1G54540 236 / 2e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10031317 [exp] 147 / 4e-43 AT1G54540 231 / 1e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10033705 [exp] 70 / 7e-14 AT1G65690 114 / 1e-30 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016962 [exp] 69 / 7e-14 AT2G35980 237 / 3e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003824 [exp] 68 / 2e-13 AT1G17620 191 / 5e-60 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021287 [exp] 65 / 2e-12 AT2G35980 236 / 7e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10031635 [exp] 65 / 4e-12 AT1G65690 101 / 9e-26 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021288 [exp] 64 / 4e-12 AT2G35980 237 / 2e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G148200 [exp] 245 / 2e-81 AT5G36970 227 / 2e-74 NDR1/HIN1-like 25 (.1) Potri.012G145500 [exp] 234 / 6e-77 AT5G36970 238 / 2e-78 NDR1/HIN1-like 25 (.1) Potri.017G154000 [exp] 171 / 1e-52 AT1G54540 242 / 1e-80 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.004G067100 [exp] 159 / 5e-48 AT1G54540 203 / 3e-65 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G158900 [exp] 114 / 3e-30 AT2G27080 259 / 8e-87 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.004G197600 [exp] 105 / 8e-27 AT2G27080 264 / 8e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.013G135800 [exp] 91 / 9e-22 AT1G65690 112 / 4e-30 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G039400 [exp] 74 / 3e-15 AT1G17620 208 / 1e-66 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G071600 [exp] 70 / 2e-14 AT2G35980 205 / 9e-67 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.019G102500 [exp] 69 / 2e-14 AT1G65690 78 / 9e-18 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10020783 pacid=23140832 polypeptide=Lus10020783 locus=Lus10020783.g ID=Lus10020783.BGIv1.0 annot-version=v1.0 ATGGCCGACCAGCACAAGAAAATCCACCCACTGAACAACAACAATCAAAACGACGACGTAGAAGCCGCCGCCGCGTCCACCTCATCAGACGTTCGCCAAC ATGCTCCAACCGCACCTTTAGTGCCCCGGGGATCATCCAAATCCGACCACGGAGACCCGACCCGACCAGCGACCGTTACTCAATTACCACCGTACCCTCC ACCAACATACAAGCGGCCGAAACGACGCCGTTCAACCTGCTGCCGATGCTTCTGCTGGATATTCTCAATCCTGCTCTTCCTAGTCATAGCGCTTGACCGG CTGCAAATCGCGCGGTTCAGCCTGACGCAAACCACCCCTGCCACGCTGTCCGCCACGTTTGATGTCACCATCACGGCTAAGAACCCGAACAAGAGGATCG GGATATACTACGAAGGAGGGAGCAGGATCGGAGTTTCGTTCGCGGGTACGCAGCTCTGCCAGGGGGCGCTTCCGAAGTTCTACCAGGGCCACCGGAACAC GACGGTGCTGAACGTCCCGCTGACTGGAGAGAGCGCTGACGCGGCGGCGCTGTTTGGGGAGATGCAGAGTGAGCAGCAGAGGAATGGGTTTGTGCCGTTG GATTTGAGGGTTAGGCAGCCTGTGAGGATTAAGCTCGGGAAGCTGAAGCTGCCGAAGGTTAAGTTTGTGGTGAGGTGTCGGCTTAATGTGGATAGCTTGA CTGCGAATAATAATATCCGGATTAGGAATAGCAGTTGTAAGTTCAGGTTCAGGCTCTGA
AA sequence Show only first row Show all	>Lus10020783 pacid=23140832 polypeptide=Lus10020783 locus=Lus10020783.g ID=Lus10020783.BGIv1.0 annot-version=v1.0 MADQHKKIHPLNNNNQNDDVEAAAASTSSDVRQHAPTAPLVPRGSSKSDHGDPTRPATVTQLPPYPPPTYKRPKRRRSTCCRCFCWIFSILLFLVIALDR LQIARFSLTQTTPATLSATFDVTITAKNPNKRIGIYYEGGSRIGVSFAGTQLCQGALPKFYQGHRNTTVLNVPLTGESADAAALFGEMQSEQQRNGFVPL DLRVRQPVRIKLGKLKLPKVKFVVRCRLNVDSLTANNNIRIRNSSCKFRFRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36970		NHL25	NDR1/HIN1-like 25 (.1)		Lus10020783 [exp]	0	1
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10014146 [exp]	1.7	0.9872
					Lus10000858 [exp]	2.4	0.9850
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10018730 [exp]	3.5	0.9852
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10004460 [exp]	5.3	0.9805
AT5G10530			Concanavalin A-like lectin pro...		Lus10020456 [exp]	6.0	0.9798
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Lus10021288 [exp]	7.5	0.9794
AT1G06475			unknown protein		Lus10004931 [exp]	8.8	0.9636
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10019832 [exp]	9.7	0.9750
AT4G02920			unknown protein		Lus10008160 [exp]	10.9	0.9797
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10009351 [exp]	11.0	0.9782

Compare expression of checked genes

Lus10020783 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.