Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02680 428 / 1e-143 ATNBS1, NBS1 nijmegen breakage syndrome 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007365 [exp] 736 / 0 AT3G02680 199 / 1e-57 nijmegen breakage syndrome 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G148300 [exp] 489 / 9e-168 AT3G02680 473 / 4e-163 nijmegen breakage syndrome 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [flax] [poplar] SMAD-FHA PF00498 [flax] [poplar] FHA FHA domain
Representative CDS sequence Show only first row Show all	>Lus10020784 pacid=23140907 polypeptide=Lus10020784 locus=Lus10020784.g ID=Lus10020784.BGIv1.0 annot-version=v1.0 ATGTGGCTGAACCCAGTTGAAGACTTAGACGACGGTGTGAAATACCTTCGACGGCGATTGGCGCGCTCCACCTCGAACTCGAGCTTACTAACCAGTAACC TCTTCGGCGGTTCTTTCACAATCCGCTATACTGACTGTCAAATTCTTTCTCACGCTTTTCACGAGCCCAACAGGCTGCCGTGGCCTCCGGTCTCTGTTTC TGAAGCAACAATGGTCTGGAGTCTGTCCCCTGTTGATCCTCACTCCGGTGAAGCAAATTACTTCATCTTTAGAAAGGGAACCTACAGAGTTGGTCGCAAA GGTTGTGATATCATAATTACCAAAGACAAAGGAGTTTCACGGGTCCATGCAGAAATAGTTATTGATGAAATGGTGTCGCTTAGTCGACTTCCTGGTGAAT CCAACATATCATCAGCTCATGTTAGGATCAAAGACAGTTCAAAGTATGGAACATTCGTCAACAAGGACCGTGAGTTTAGTGAAAAGGTTCACGAGTTATC CAACAAAGAAACGATTTTAAAAGACGGGGACGTTATTTCCTTTGGAACCAGCAATGCTATATACAGAATCGTGCCTGTGTTCTGCGTGGCTCAGATGCTC TCTAGCTTGTTGATGCTTGGAAATCATGATTCTCTTGCACTTAAATTTGGTAGGTTTTCCTTTGTACCCTTCGTCTTCTACACTCATTGTTCTCAGCCCC GTGCAATTCGAGACAAAATGTCATCAATTGGTGCACGTTGCACAACTGACTTCAGTGATGAGTGCACACATGTGCTAGTTGATCAACTCACGCCTGTGAA TGGTGCTTTGATCAATGCTATTGTGGCCAAAAAAACAATTATTCTTACGAGCTGTGTGGAGTTGATTGCAGAAAAGAGCATTGGCTCAGAAATTCCTAGC TGGAGCTCTAATATTCCAACATTGACGGTGGAAGGAGCCTCGGTCCAGTTAGTAGACTCTGTAACCCGTTCAAAATGTTTGGAAGGATACACTATGATAC TGGACTCGAAACAAATGTATCAATTTGGTGATAGACTGCCTGCTCTGTCGGAAGTGGCTGGTGCAAAGGCGATTTCTGTTGACGAATATTGTTCTAGCAG CCATGACACCTATTACGAAGAAAAAAACAAGGTCATATGTGTTACTACTGAAGGATCAGCCAGCAAACTGGACCATGTTACAGAACTTGGTTTGTTTTCT AGAGTGGACGAGATTGATCTGTTGCGTGCTATTCTGTCCGGACATCTCGATACGTCTATGTTAGTACTACCAACTGTGCACGTATCATTATCGTCCACCA CGGATGAGACAATAGTAGCTGATTCCGAAACAGAAGGAGAAGTCGACACAGTAACATCAGTTCCTGCCAAAGCTAGTAGTACTATCAGTGAAGTTGCTCC GAAATGTGAAAAGATAAAGGAGGTAGTATCTCTTCCCTTAAACCCTGCCAAAAAATTAGTGGACGAGACTCGTACTGTTCGCTCTGTATATGTCGATGGC ACGGGCATGACAGCGAAGATAAAGAAGGTCGAATACGAGGATGCTGGAATTGATATCATTTACAGCCAACAGTTGATAGTTAGAGCCTCGAATTCGTCCG CTGAAGCTAGGTCCATCGTCGGCAATGGAGTTCCGAATTTCAAATGCTTCAGAAAAAAATGCATGCAGTCTGGGAATAGCTTCAGTAATCTAGTTCAGTT CTCAAAAGACCCTTACAGAGAGGCCAGCTTTGATAGTACGGAGATCAGAGAGTCGATGAAAGAAGAGAAGAAACGAAAGCAAATGGAAGCGGCTGCAGAG GACATGTTCAATAACCAACGGGGGAAAAAGAAGGGCGTGGCTGGTTCCATTCATGGTCTTTTTGCTCGTACCCGTAGATGA
AA sequence Show only first row Show all	>Lus10020784 pacid=23140907 polypeptide=Lus10020784 locus=Lus10020784.g ID=Lus10020784.BGIv1.0 annot-version=v1.0 MWLNPVEDLDDGVKYLRRRLARSTSNSSLLTSNLFGGSFTIRYTDCQILSHAFHEPNRLPWPPVSVSEATMVWSLSPVDPHSGEANYFIFRKGTYRVGRK GCDIIITKDKGVSRVHAEIVIDEMVSLSRLPGESNISSAHVRIKDSSKYGTFVNKDREFSEKVHELSNKETILKDGDVISFGTSNAIYRIVPVFCVAQML SSLLMLGNHDSLALKFGRFSFVPFVFYTHCSQPRAIRDKMSSIGARCTTDFSDECTHVLVDQLTPVNGALINAIVAKKTIILTSCVELIAEKSIGSEIPS WSSNIPTLTVEGASVQLVDSVTRSKCLEGYTMILDSKQMYQFGDRLPALSEVAGAKAISVDEYCSSSHDTYYEEKNKVICVTTEGSASKLDHVTELGLFS RVDEIDLLRAILSGHLDTSMLVLPTVHVSLSSTTDETIVADSETEGEVDTVTSVPAKASSTISEVAPKCEKIKEVVSLPLNPAKKLVDETRTVRSVYVDG TGMTAKIKKVEYEDAGIDIIYSQQLIVRASNSSAEARSIVGNGVPNFKCFRKKCMQSGNSFSNLVQFSKDPYREASFDSTEIRESMKEEKKRKQMEAAAE DMFNNQRGKKKGVAGSIHGLFARTRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02680		ATNBS1, NBS1	nijmegen breakage syndrome 1 (...		Lus10020784 [exp]	0	1
AT5G06350			ARM repeat superfamily protein...		Lus10004194 [exp]	2.2	0.8955
AT1G14770			RING/FYVE/PHD zinc finger supe...		Lus10015562 [exp]	2.4	0.8891
AT1G50910			unknown protein		Lus10043058 [exp]	2.8	0.8808
AT4G01310			Ribosomal L5P family protein (...		Lus10010251 [exp]	3.5	0.8669
AT1G45150			unknown protein		Lus10002387 [exp]	10.6	0.8628
					Lus10014678 [exp]	11.4	0.8872
AT1G60560			SWIM zinc finger family protei...		Lus10025765 [exp]	12.6	0.8269
AT5G20040		ATIPT9	ARABIDOPSIS THALIANA ISOPENTEN...		Lus10027928 [exp]	13.0	0.8755
					Lus10024697 [exp]	14.5	0.8264
					Lus10005904 [exp]	15.5	0.8415

Compare expression of checked genes

Lus10020784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.