Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06460 133 / 4e-37 ACD31.2, ACD32.1 ALPHA-CRYSTALLIN DOMAIN 31.2, alpha-crystallin domain 32.1 (.1) AT1G07400 49 / 3e-07 HSP20-like chaperones superfamily protein (.1) AT1G59860 47 / 2e-06 HSP20-like chaperones superfamily protein (.1) AT1G53540 42 / 0.0001 HSP20-like chaperones superfamily protein (.1) AT4G27670 42 / 0.0002 HSP21 heat shock protein 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007366 [exp] 467 / 5e-168 AT1G06460 149 / 3e-43 ALPHA-CRYSTALLIN DOMAIN 31.2, alpha-crystallin domain 32.1 (.1) Lus10026262 [exp] 50 / 3e-07 AT4G10250 152 / 5e-47 HSP20-like chaperones superfamily protein (.1) Lus10042408 [exp] 49 / 8e-07 AT4G10250 154 / 1e-47 HSP20-like chaperones superfamily protein (.1) Lus10000932 [exp] 42 / 0.0001 AT4G10250 200 / 2e-65 HSP20-like chaperones superfamily protein (.1) Lus10024225 [exp] 42 / 0.0002 AT1G52560 197 / 4e-63 HSP20-like chaperones superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G141500 [exp] 152 / 2e-44 AT1G06460 164 / 3e-49 ALPHA-CRYSTALLIN DOMAIN 31.2, alpha-crystallin domain 32.1 (.1) Potri.009G148000 [exp] 46 / 6e-06 AT2G29500 190 / 7e-63 HSP20-like chaperones superfamily protein (.1) Potri.009G049800 [exp] 44 / 2e-05 AT2G29500 152 / 4e-48 HSP20-like chaperones superfamily protein (.1) Potri.019G081250 [exp] 44 / 2e-05 AT2G29500 182 / 6e-60 HSP20-like chaperones superfamily protein (.1) Potri.004G187400 [exp] 44 / 2e-05 AT1G07400 193 / 7e-64 HSP20-like chaperones superfamily protein (.1) Potri.009G049900 [exp] 44 / 3e-05 AT2G29500 154 / 2e-48 HSP20-like chaperones superfamily protein (.1) Potri.004G187450 [exp] 42 / 0.0001 AT2G29500 221 / 5e-75 HSP20-like chaperones superfamily protein (.1) Potri.009G039200 [exp] 42 / 0.0001 AT1G07400 201 / 3e-67 HSP20-like chaperones superfamily protein (.1) Potri.009G147900 [exp] 42 / 0.0002 AT2G29500 193 / 5e-64 HSP20-like chaperones superfamily protein (.1) Potri.004G187202 [exp] 40 / 0.0004 AT2G29500 209 / 1e-70 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10020785 pacid=23140836 polypeptide=Lus10020785 locus=Lus10020785.g ID=Lus10020785.BGIv1.0 annot-version=v1.0 ATGGATACCGAAACGGCCGCTAGCCGGAGGATGAAGGTCGTCGCCGGCCACTTCTCTCCCTCCGCCGACGAACTCTGTCCTCCTCCTCATACCGCCGCCT CCGCCTGCCTCCTCCCGATGAACTGCAGCAGCAATGTATTTAACACAGTTATGCCGCCGCGGCGGAGGTGCGATAATCGGACCTACTTCGCACGCCAGAG TTCATCTTCCCAGTCTTTCTTCATGCGGCAGAAGCAGGATCCTTCTCCACCGCAAGGATGTGGGGTGAGGAAGCAAGAAAGGCCTCTCCGATCAGCGAAA GGAACCCCGTCCAGTGCGCCGTTATTTTCGCGACCTAGAACCACCGCAGATCCGAACTTCTGTAGGCAGGCAGCGGCAACGCCTTCGACTAGAAACTTCA TTCATAGCTCCCGGATGTATGAACTCCCTGAACACTCACGGCCGTGCTCTTCGTCACCGGTTCCCAGCCTCCTCCTCCCTGAATTCGCCAAGCCGGCAAC CGCAGATGGACGCAGGAGCACCAGAGCGAAACAGTCTCCGGCCAGTGAAATGGATGGATGGTCACCGAAGATGGACGTGAGTGAATCCGCTAGCTATTTC CTCGTGACAGTAGAAATCCCCGGCGGAGACATTCGTGACATGCGAGTGGAAGTCGATGACCACAATTTGAGAATAATGGGGAAGAAGTGCTTACCAGCCA TGACACAGCCAACATACCACAAGAGAGAGATCTTGCAAGGTCCATACCAGATTCTATGGCCACTTCCTTCTTGCTCCGACAAGGACTCCGTCTCAGCTGA GTTTGTGAATGGACTTCTGCATGTTACTGTGCCAAAGCTTTAA
AA sequence Show only first row Show all	>Lus10020785 pacid=23140836 polypeptide=Lus10020785 locus=Lus10020785.g ID=Lus10020785.BGIv1.0 annot-version=v1.0 MDTETAASRRMKVVAGHFSPSADELCPPPHTAASACLLPMNCSSNVFNTVMPPRRRCDNRTYFARQSSSSQSFFMRQKQDPSPPQGCGVRKQERPLRSAK GTPSSAPLFSRPRTTADPNFCRQAAATPSTRNFIHSSRMYELPEHSRPCSSSPVPSLLLPEFAKPATADGRRSTRAKQSPASEMDGWSPKMDVSESASYF LVTVEIPGGDIRDMRVEVDDHNLRIMGKKCLPAMTQPTYHKREILQGPYQILWPLPSCSDKDSVSAEFVNGLLHVTVPKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06460		ACD31.2, ACD32....	ALPHA-CRYSTALLIN DOMAIN 31.2, ...		Lus10020785 [exp]	0	1
					Lus10008409 [exp]	2.2	0.9592
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10025821 [exp]	2.4	0.9493
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10008861 [exp]	4.0	0.9466
					Lus10030762 [exp]	4.6	0.9472
					Lus10005901 [exp]	6.3	0.8955
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Lus10033231 [exp]	6.7	0.9004
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Lus10004452 [exp]	7.1	0.9370
					Lus10018996 [exp]	7.5	0.9301
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10027500 [exp]	7.9	0.8944
					Lus10013331 [exp]	8.5	0.8677

Compare expression of checked genes

Lus10020785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.